Basic Information
Gene Model:Bol028489
Gene Family:Protein Kinase Gene Families
Chromosome:C01
Scaffold:Scaffold000071
Sequence:
 | 
Gene Structure
Nucleotide Length:3801 bp
Transcript Length:2121 bp
Protein Length:706 aa
Strand:+
Location:C01: 8599111 : 8602911
Gene CDSs(13): 1-91 | 433-562 | 670-741 | 828-893 | 989-1060 | 1138-1209 | 1289-1360 | 1446-1511 | 1987-2052 | 2140-2967 | 3038-3313 | 3407-3563 | 3649-3801 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 179 190 NANot foundNot found
Segsegseg 256 268 NANot foundNot found
Segsegseg 668 682 NANot foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 74 579 1e-215Not foundNot found
HMMPantherPTHR23258:SF463STRUBBELIG RECEPTOR 74 579 1e-215Not foundNot found
HMMPfamPF00069Pkinase 398 615 3.9e-35IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF00560LRR_1 116 138 0.011IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 164 186 0.00039IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 188 209 1.2IPR001611Leucine-rich repeat
HMMPfamPF08263LRRNT_2 27 67 2e-13IPR013210Leucine-rich repeat, N-terminal
BlastProDomPD588499Q5PQS5_RAT_Q5PQS5; 286 359 0.007Not foundNot found
HMMSmartSM00220no description 398 673 1.4e-30IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00219no description 398 672 1.4e-16IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
ProfileScanPS50011PROTEIN_KINASE_DOM 398 675 37.630IPR000719Protein kinase, catalytic domain
Gene3DG3DSA:3.80.10.10no description 24 242 2.8e-39Not foundNot found
Gene3DG3DSA:3.30.200.20no description 379 475 2.6e-20Not foundNot found
Gene3DG3DSA:1.10.510.10no description 478 683 2.1e-47Not foundNot found
superfamilySSF52058L domain-like 24 237 1.6e-40Not foundNot found
superfamilySSF56112Protein kinase-like 387 701 1.9e-76IPR011009Protein kinase-like domain
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005515 Molecular Function protein binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q6R2J80.0SRF8_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1
TrEMBL
Best HitE_value Description
C0LGR00.0C0LGR0_ARATH Leucine-rich repeat receptor-like protein kinase (Fragment) OS=Arabidopsis thaliana GN=LRR-RLK PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
osa:43294636e-73K13430PBS1serine/threonine-protein kinase PBS1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT1G53730.2
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT1G78980.1
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT3G13062.2
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT3G13065.1
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT4G22130.1
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol005080
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol010246
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol010626
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol011822
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol015780
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol015781
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol028489
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol035140
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol035507
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol038497
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol039093
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra001486
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra013591
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra021551
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra027347
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra030923
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra034709
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra035080
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra039367
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra039687
ORTHOMCL105(60 genes,8 taxa):Vitis viniferaGSVIVT01004806001
ORTHOMCL105(60 genes,8 taxa):Vitis viniferaGSVIVT01016654001
ORTHOMCL105(60 genes,8 taxa):Vitis viniferaGSVIVT01029461001
ORTHOMCL105(60 genes,8 taxa):Vitis viniferaGSVIVT01029462001
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs02t0190500-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs02t0468400-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs03t0183800-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs03t0183800-02
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs03t0397700-02
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs06t0634500-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs07t0618400-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs07t0618400-02
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs09t0559900-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs10t0389800-01
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0001s16170.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0003s07130.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0007s15160.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0007s15170.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0011s01540.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0011s01540.2
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0011s01540.3
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0014s00330.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0014s00340.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb01g024160.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb01g033190.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb01g045010.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb02g032710.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb02g039370.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb04g006110.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb04g017500.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb10g024830.1
ORTHOMCL105(60 genes,8 taxa):Carica papayaevm.TU.supercontig_10.11
ORTHOMCL105(60 genes,8 taxa):Carica papayaevm.TU.supercontig_10.7
ORTHOMCL105(60 genes,8 taxa):Carica papayaevm.TU.supercontig_152.50
ORTHOMCL105(60 genes,8 taxa):Carica papayaevm.TU.supercontig_229.17
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:7418478..14237322 (+)A.thalianaChr4:11126151..13975908 (+)479
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:7437801..8994406 (+)B.rapaA09:32486284..33945408 (-)33
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G221301172351311727673Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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