Basic Information
Gene Model:Bol028435
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000071
Sequence:
 | 
Gene Structure
Nucleotide Length:2859 bp
Transcript Length:2073 bp
Protein Length:690 aa
Strand:-
Location:C01: 8057578 : 8060436
Gene CDSs(9): 1-557 | 627-819 | 900-1014 | 1091-1326 | 1412-1782 | 1903-2205 | 2288-2464 | 2573-2670 | 2837-2859 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR10795SUBTILISIN/KEXIN-REL 1 687 0IPR015500Peptidase S8, subtilisin-related
HMMPantherPTHR10795:SF17SUBTILISIN-LIKE PROT 1 687 0Not foundNot found
superfamilySSF52743Subtilisin-like 39 549 5.7e-73IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Segsegseg 411 422 NANot foundNot found
Segsegseg 174 187 NANot foundNot found
PatternScanPS00138SUBTILASE_SER 471 481 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Gene3DG3DSA:3.40.50.200no description 82 543 9.1e-69IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPfamPF05922Inhibitor_I9 1 57 1e-17IPR010259Proteinase inhibitor I9, subtilisin propeptide
HMMPfamPF00082Peptidase_S8 236 522 1e-17IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Gene Ontology
GO TermGO TypeDescription
GO:0004252 Molecular Function serine-type endopeptidase activity
GO:0006508 Biological Process proteolysis
GO:0042802 Molecular Function identical protein binding
GO:0043086 Biological Process negative regulation of catalytic activity
Swiss-Prot
Best HitE_value Description
O653511e-128SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q8GUK40.0Q8GUK4_ARATH Subtilisin proteinase-like OS=Arabidopsis thaliana GN=At4g21650 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT1G32940.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT1G32950.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT1G32960.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT1G32970.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G10510.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G10520.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G10530.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G10540.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G10550.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G21323.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G21630.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G21640.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G21650.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT5G11940.1
ORTHOMCL88(65 genes,8 taxa):Brassica oleraceaBol003579
ORTHOMCL88(65 genes,8 taxa):Brassica oleraceaBol022191
ORTHOMCL88(65 genes,8 taxa):Brassica oleraceaBol024298
ORTHOMCL88(65 genes,8 taxa):Brassica oleraceaBol024299
ORTHOMCL88(65 genes,8 taxa):Brassica oleraceaBol028435
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra004153
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra004154
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra013544
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra022966
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra023297
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra023300
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra023349
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra033170
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra037906
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra038766
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra038768
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra038777
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra038778
ORTHOMCL88(65 genes,8 taxa):Vitis viniferaGSVIVT01019686001
ORTHOMCL88(65 genes,8 taxa):Vitis viniferaGSVIVT01019687001
ORTHOMCL88(65 genes,8 taxa):Vitis viniferaGSVIVT01024195001
ORTHOMCL88(65 genes,8 taxa):Vitis viniferaGSVIVT01038620001
ORTHOMCL88(65 genes,8 taxa):Vitis viniferaGSVIVT01038641001
ORTHOMCL88(65 genes,8 taxa):Vitis viniferaGSVIVT01038642001
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs01t0794800-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs01t0795000-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs01t0795200-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs02t0269600-00
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs02t0270200-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs02t0270900-00
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs02t0271000-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs04t0121100-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs04t0121300-00
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs04t0127200-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs04t0127200-02
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs04t0127300-01
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0001s45450.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0001s45470.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0001s45480.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0001s45490.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0004s16850.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0009s12610.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0011s15400.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0011s15440.1
ORTHOMCL88(65 genes,8 taxa):Sorghum bicolorSb02g030760.1
ORTHOMCL88(65 genes,8 taxa):Sorghum bicolorSb03g037010.1
ORTHOMCL88(65 genes,8 taxa):Sorghum bicolorSb05g022600.1
ORTHOMCL88(65 genes,8 taxa):Sorghum bicolorSb05g022620.1
ORTHOMCL88(65 genes,8 taxa):Sorghum bicolorSb06g001140.1
ORTHOMCL88(65 genes,8 taxa):Carica papayaevm.TU.supercontig_1420.2
ORTHOMCL88(65 genes,8 taxa):Carica papayaevm.TU.supercontig_1497.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:7724934..8602911 (-)A.thalianaChr4:2231957..2760912 (+)21
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:7437801..8994406 (+)B.rapaA09:32486284..33945408 (-)33
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G216501150119811504678Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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