Basic Information
Gene Model:Bol028427
Gene Family:Transcription Factor Families
Chromosome:C01
Scaffold:Scaffold000071
Sequence:
 | 
Gene Structure
Nucleotide Length:5080 bp
Transcript Length:2145 bp
Protein Length:714 aa
Strand:+
Location:C01: 7994225 : 7999304
Gene CDSs(12): 1-128 | 860-941 | 1044-1142 | 1366-1669 | 1800-2148 | 2364-2460 | 2664-2838 | 3005-3084 | 3431-3475 | 3564-3767 | 4240-4271 | 4531-5080 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 543 560 NANot foundNot found
Segsegseg 465 479 NANot foundNot found
ProfileScanPS50863B3 330 431 11.237IPR003340Transcriptional factor B3
HMMPfamPF02362B3 329 432 1.8e-24IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 317 445 2.1e-28Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
O654200.0VAL3_ARATH B3 domain-containing transcription factor VAL3 OS=Arabidopsis thaliana GN=VAL3 PE=2 SV=2
TrEMBL
Best HitE_value Description
B9S6171e-144B9S617_RICCO Transcription factor, putative OS=Ricinus communis GN=RCOM_1063050 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_8140482e-11K09287RAVRAV-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL18909(3 genes,3 taxa):Arabidopsis thalianaAT4G21550.1
ORTHOMCL18909(3 genes,3 taxa):Brassica oleraceaBol028427
ORTHOMCL18909(3 genes,3 taxa):Brassica rapaBra013535
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:7724934..8602911 (-)A.thalianaChr4:2231957..2760912 (+)21
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:7437801..8994406 (+)B.rapaA09:32486284..33945408 (-)33
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G215501146398711468679Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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