Basic Information
Gene Model:Bol028412
Gene Family:U-box Gene Family
Chromosome:C01
Scaffold:Scaffold000071
Sequence:
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Gene Structure
Nucleotide Length:1104 bp
Transcript Length:1104 bp
Protein Length:367 aa
Strand:-
Location:C01: 7866975 : 7868078
Gene CDSs(1): 1-1104 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00185no description 203 241 69IPR000225Armadillo
HMMSmartSM00185no description 118 158 27IPR000225Armadillo
HMMSmartSM00185no description 159 199 13IPR000225Armadillo
HMMSmartSM00504no description 8 72 3.8e-33IPR003613U box domain
Gene3DG3DSA:1.25.10.10no description 47 364 1.7e-34IPR011989Armadillo-like helical
HMMPantherPTHR23258SERINE-THREONINE PRO 6 83 2.7e-09Not foundNot found
HMMPantherPTHR23258:SF448RECEPTOR PROTEIN KIN 6 83 2.7e-09Not foundNot found
superfamilySSF57850RING/U-box 9 65 2.1e-16Not foundNot found
superfamilySSF48371ARM repeat 45 360 1.1e-40IPR016024Armadillo-type fold
Segsegseg 92 114 NANot foundNot found
Segsegseg 147 163 NANot foundNot found
Segsegseg 188 202 NANot foundNot found
HMMPfamPF04564U-box 4 79 8.1e-23IPR003613U box domain
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
O819020.0PUB8_ARATH U-box domain-containing protein 8 OS=Arabidopsis thaliana GN=PUB8 PE=2 SV=1
TrEMBL
Best HitE_value Description
B1P3M21e-129B1P3M2_ARAHA U-box domain-containing protein (Fragment) OS=Arabidopsis halleri GN=B80 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vcn:VOLCADRAFT_678406e-09K09561STUB1, CHIPSTIP1 homology and U-box containing protein 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11816(7 genes,6 taxa):Arabidopsis thalianaAT4G21350.1
ORTHOMCL11816(7 genes,6 taxa):Brassica oleraceaBol028412
ORTHOMCL11816(7 genes,6 taxa):Brassica rapaBra013521
ORTHOMCL11816(7 genes,6 taxa):Vitis viniferaGSVIVT01006112001
ORTHOMCL11816(7 genes,6 taxa):Populus trichocarpaPOPTR_0004s02840.1
ORTHOMCL11816(7 genes,6 taxa):Populus trichocarpaPOPTR_0011s03580.1
ORTHOMCL11816(7 genes,6 taxa):Carica papayaevm.TU.supercontig_27.168
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:7724934..8602911 (-)A.thalianaChr4:2231957..2760912 (+)21
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:7437801..8994406 (+)B.rapaA09:32486284..33945408 (-)33
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G213501135614311357267Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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