Basic Information
Gene Model:Bol028350
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000071
Sequence:
 | 
Gene Structure
Nucleotide Length:3479 bp
Transcript Length:2577 bp
Protein Length:858 aa
Strand:-
Location:C01: 7400016 : 7403494
Gene CDSs(9): 1-701 | 768-1038 | 1113-1447 | 1523-1805 | 1897-1969 | 2207-2302 | 2382-2782 | 2862-3021 | 3223-3479 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 842 857 NANot foundNot found
Segsegseg 320 337 NANot foundNot found
Segsegseg 89 102 NANot foundNot found
Segsegseg 9 20 NANot foundNot found
superfamilySSF52743Subtilisin-like 143 718 3e-72IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
PatternScanPS00138SUBTILASE_SER 634 644 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
PatternScanPS00136SUBTILASE_ASP 191 202 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPfamPF02225PA 425 541 4.2e-14IPR003137Protease-associated PA
HMMPfamPF00082Peptidase_S8 164 678 4.8e-29IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPfamPF05922Inhibitor_I9 38 161 1.4e-11IPR010259Proteinase inhibitor I9, subtilisin propeptide
Gene3DG3DSA:3.40.50.200no description 182 712 1e-66IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPantherPTHR10795SUBTILISIN/KEXIN-REL 82 856 1.2e-255IPR015500Peptidase S8, subtilisin-related
HMMPantherPTHR10795:SF17SUBTILISIN-LIKE PROT 82 856 1.2e-255Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004252 Molecular Function serine-type endopeptidase activity
GO:0006508 Biological Process proteolysis
GO:0042802 Molecular Function identical protein binding
GO:0043086 Biological Process negative regulation of catalytic activity
Swiss-Prot
Best HitE_value Description
O653515e-82SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9SUN60.0Q9SUN6_ARATH Putative serine proteinase OS=Arabidopsis thaliana GN=AT4g20430 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT1G30600.1
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT2G19170.1
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT4G20430.1
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT4G30020.1
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT5G44530.1
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol006370
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol014603
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol020964
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol022689
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol028350
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol029805
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol033631
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra011160
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra013464
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra024112
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra032407
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra033749
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra036728
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra038844
ORTHOMCL322(33 genes,8 taxa):Vitis viniferaGSVIVT01004808001
ORTHOMCL322(33 genes,8 taxa):Vitis viniferaGSVIVT01010871001
ORTHOMCL322(33 genes,8 taxa):Vitis viniferaGSVIVT01037948001
ORTHOMCL322(33 genes,8 taxa):Oryza sativaOs01t0769200-01
ORTHOMCL322(33 genes,8 taxa):Oryza sativaOs06t0700000-01
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0001s15120.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0001s43080.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0006s07580.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0011s15890.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0018s14020.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0018s14020.2
ORTHOMCL322(33 genes,8 taxa):Sorghum bicolorSb03g035770.1
ORTHOMCL322(33 genes,8 taxa):Sorghum bicolorSb10g028870.1
ORTHOMCL322(33 genes,8 taxa):Carica papayaevm.TU.supercontig_95.18
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:7192898..7723875 (-)A.thalianaChr5:17814336..18036894 (+)16
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:5858746..7789285 (+)B.rapaA08:10118463..11165023 (-)55
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G204301101765611021280Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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