Basic Information
Gene Model:Bol028348
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000071
Sequence:
 | 
Gene Structure
Nucleotide Length:2413 bp
Transcript Length:876 bp
Protein Length:291 aa
Strand:-
Location:C01: 7396500 : 7398912
Gene CDSs(9): 1-93 | 246-375 | 532-611 | 696-774 | 954-1091 | 1255-1413 | 1517-1601 | 1785-1852 | 2370-2413 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:1.25.40.10no description 2 249 1.8e-49IPR011990Tetratricopeptide-like helical
HMMPantherPTHR13768SOLUBLE NSF ATTACHME 2 291 1.2e-111IPR000744NSF attachment protein
HMMPantherPTHR13768:SF2GAMMA-SOLUBLE NSF AT 2 291 1.2e-111Not foundNot found
superfamilySSF48452TPR-like 3 251 3.4e-36Not foundNot found
Segsegseg 110 120 NANot foundNot found
HMMPfamPF02071NSF 30 41 3.8IPR000744NSF attachment protein
Gene Ontology
GO TermGO TypeDescription
GO:0005488 Molecular Function binding
GO:0005783 Cellular Component endoplasmic reticulum
GO:0005794 Cellular Component Golgi apparatus
GO:0006886 Biological Process intracellular protein transport
Swiss-Prot
Best HitE_value Description
Q9SPE51e-159SNAG_ARATH Gamma-soluble NSF attachment protein OS=Arabidopsis thaliana GN=GSNAP PE=2 SV=1
TrEMBL
Best HitE_value Description
Q24JN41e-158Q24JN4_ARATH AT4G20410 protein OS=Arabidopsis thaliana GN=AT4G20410 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ota:Ot03g033803e-32K03064PSMC6, RPT426S proteasome regulatory subunit T4
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8195(9 genes,8 taxa):Arabidopsis thalianaAT4G20410.1
ORTHOMCL8195(9 genes,8 taxa):Brassica oleraceaBol028348
ORTHOMCL8195(9 genes,8 taxa):Brassica rapaBra013462
ORTHOMCL8195(9 genes,8 taxa):Vitis viniferaGSVIVT01037942001
ORTHOMCL8195(9 genes,8 taxa):Oryza sativaOs04t0618500-01
ORTHOMCL8195(9 genes,8 taxa):Populus trichocarpaPOPTR_0001s43110.1
ORTHOMCL8195(9 genes,8 taxa):Populus trichocarpaPOPTR_0011s15870.1
ORTHOMCL8195(9 genes,8 taxa):Sorghum bicolorSb06g028740.1
ORTHOMCL8195(9 genes,8 taxa):Carica papayaevm.TU.supercontig_173.43
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:7192898..7723875 (-)A.thalianaChr5:17814336..18036894 (+)16
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:5858746..7789285 (+)B.rapaA08:10118463..11165023 (-)55
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G204101101389511016576Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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