Basic Information
Gene Model:Bol028261
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000072
Sequence:
 | 
Gene Structure
Nucleotide Length:840 bp
Transcript Length:840 bp
Protein Length:279 aa
Strand:+
Location:C08: 13811223 : 13812062
Gene CDSs(1): 1-840 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50089ZF_RING_2 117 159 12.666IPR001841Zinc finger, RING-type
HMMPfamPF00097zf-C3HC4 117 158 2.8e-10IPR018957Zinc finger, C3HC4 RING-type
HMMPantherPTHR22764RING FINGER PROTEIN 113 170 2.3e-17Not foundNot found
Gene3DG3DSA:3.30.40.10no description 110 164 2e-14Not foundNot found
superfamilySSF57850RING/U-box 110 164 2.2e-16Not foundNot found
Segsegseg 103 112 NANot foundNot found
Segsegseg 247 265 NANot foundNot found
Segsegseg 63 74 NANot foundNot found
Segsegseg 33 41 NANot foundNot found
HMMSmartSM00184no description 117 158 8.8e-07IPR001841Zinc finger, RING-type
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q8L9T55e-64ATL3F_ARATH RING-H2 finger protein ATL3F OS=Arabidopsis thaliana GN=ATL3F PE=2 SV=2
TrEMBL
Best HitE_value Description
Q4FE426e-63Q4FE42_ARATH At3g16720 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
dgr:Dgri_GH236211e-09K11980RNF11E3 ubiquitin-protein ligase RNF11
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL26127(2 genes,2 taxa):Brassica oleraceaBol028261
ORTHOMCL26127(2 genes,2 taxa):Brassica rapaBra038051
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:12863661..14488344 (+)A.thalianaChr4:8730723..9401382 (+)50
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:12701861..14052746 (+)B.rapaA08:17706913..18145104 (-)32
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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