Basic Information
Gene Model:Bol028166
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000073
Sequence:
 | 
Gene Structure
Nucleotide Length:2950 bp
Transcript Length:1482 bp
Protein Length:493 aa
Strand:-
Location:C07: 6211344 : 6214293
Gene CDSs(13): 1-84 | 183-228 | 305-418 | 610-731 | 820-885 | 1146-1469 | 1552-1653 | 1757-1794 | 1902-2004 | 2104-2226 | 2358-2428 | 2534-2679 | 2808-2950 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF53474alpha/beta-Hydrolase 21 493 1.3e-137Not foundNot found
PatternScanPS00560CARBOXYPEPT_SER_HIS 460 477 NAIPR018202Peptidase S10, serine carboxypeptidase, active site
PatternScanPS00131CARBOXYPEPT_SER_SER 176 183 NAIPR018202Peptidase S10, serine carboxypeptidase, active site
HMMPfamPF00450Peptidase_S10 36 490 4.4e-219IPR001563Peptidase S10, serine carboxypeptidase
Gene3DG3DSA:3.40.50.1820no description 44 490 2.4e-131Not foundNot found
Segsegseg 2 21 NANot foundNot found
HMMPantherPTHR11802SERINE PROTEASE FAMI 17 493 1.9e-251IPR001563Peptidase S10, serine carboxypeptidase
HMMPantherPTHR11802:SF7SERINE CARBOXYPEPTID 17 493 1.9e-251Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004185 Molecular Function serine-type carboxypeptidase activity
GO:0006508 Biological Process proteolysis
Swiss-Prot
Best HitE_value Description
Q9LSV80.0SCP21_ARATH Serine carboxypeptidase-like 21 OS=Arabidopsis thaliana GN=SCPL21 PE=2 SV=2
TrEMBL
Best HitE_value Description
B9IB280.0B9IB28_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_835003 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G254200.0K13289CTSAcathepsin A (carboxypeptidase C)
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1030(20 genes,8 taxa):Arabidopsis thalianaAT3G25420.1
ORTHOMCL1030(20 genes,8 taxa):Arabidopsis thalianaAT4G12910.1
ORTHOMCL1030(20 genes,8 taxa):Brassica oleraceaBol028166
ORTHOMCL1030(20 genes,8 taxa):Brassica oleraceaBol040318
ORTHOMCL1030(20 genes,8 taxa):Brassica rapaBra015124
ORTHOMCL1030(20 genes,8 taxa):Brassica rapaBra032681
ORTHOMCL1030(20 genes,8 taxa):Vitis viniferaGSVIVT01003805001
ORTHOMCL1030(20 genes,8 taxa):Vitis viniferaGSVIVT01019073001
ORTHOMCL1030(20 genes,8 taxa):Vitis viniferaGSVIVT01019074001
ORTHOMCL1030(20 genes,8 taxa):Oryza sativaOs04t0321700-01
ORTHOMCL1030(20 genes,8 taxa):Oryza sativaOs04t0321700-02
ORTHOMCL1030(20 genes,8 taxa):Oryza sativaOs12t0257000-01
ORTHOMCL1030(20 genes,8 taxa):Oryza sativaOs12t0257000-02
ORTHOMCL1030(20 genes,8 taxa):Populus trichocarpaPOPTR_0014s17580.1
ORTHOMCL1030(20 genes,8 taxa):Populus trichocarpaPOPTR_0019s08160.1
ORTHOMCL1030(20 genes,8 taxa):Sorghum bicolorSb06g011100.1
ORTHOMCL1030(20 genes,8 taxa):Sorghum bicolorSb08g006540.1
ORTHOMCL1030(20 genes,8 taxa):Sorghum bicolorSb08g006590.1
ORTHOMCL1030(20 genes,8 taxa):Sorghum bicolorSb08g006600.1
ORTHOMCL1030(20 genes,8 taxa):Carica papayaevm.TU.supercontig_39.39
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:6129806..7230434 (-)A.thalianaChr3:9052982..9271390 (+)27
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:4303825..6881871 (+)B.rapaA07:8817891..9848845 (-)60
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G2542092178329220925Chr3Subgenome_III(LF)24
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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