Basic Information
Gene Model:Bol028147
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000073
Sequence:
 | 
Gene Structure
Nucleotide Length:1698 bp
Transcript Length:1698 bp
Protein Length:565 aa
Strand:+
Location:C07: 5926588 : 5928285
Gene CDSs(1): 1-1698 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 104 115 NANot foundNot found
Segsegseg 30 41 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
Q9SI070.0Q9SI07_ARATH Expressed protein OS=Arabidopsis thaliana GN=At2g04280 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5913(10 genes,8 taxa):Arabidopsis thalianaAT2G04280.1
ORTHOMCL5913(10 genes,8 taxa):Arabidopsis thalianaAT4G12700.1
ORTHOMCL5913(10 genes,8 taxa):Brassica oleraceaBol028147
ORTHOMCL5913(10 genes,8 taxa):Brassica rapaBra015145
ORTHOMCL5913(10 genes,8 taxa):Vitis viniferaGSVIVT01030123001
ORTHOMCL5913(10 genes,8 taxa):Oryza sativaOs10t0456400-01
ORTHOMCL5913(10 genes,8 taxa):Oryza sativaOs10t0456400-02
ORTHOMCL5913(10 genes,8 taxa):Populus trichocarpaPOPTR_0014s16810.1
ORTHOMCL5913(10 genes,8 taxa):Sorghum bicolorSb01g020270.1
ORTHOMCL5913(10 genes,8 taxa):Carica papayaevm.TU.supercontig_136.48
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:5691801..5966414 (-)A.thalianaChr2:1445401..1592667 (+)14
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:4303825..6881871 (+)B.rapaA07:8817891..9848845 (-)60
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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