Basic Information
Gene Model:Bol028137
Gene Family:Protein tyrosine phosphatase (PTP) family
Chromosome:C07
Scaffold:Scaffold000073
Sequence:
 | 
Gene Structure
Nucleotide Length:1610 bp
Transcript Length:684 bp
Protein Length:227 aa
Strand:-
Location:C07: 5694115 : 5695724
Gene CDSs(5): 1-272 | 415-473 | 623-680 | 1173-1224 | 1368-1610 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50056TYR_PHOSPHATASE_2 107 158 8.651IPR000387Dual-specific/protein-tyrosine phosphatase, conserved region
ProfileScanPS50054TYR_PHOSPHATASE_DUAL 99 139 15.480IPR020422Dual specificity phosphatase, subgroup, catalytic domain
Segsegseg 191 204 NANot foundNot found
superfamilySSF52799(Phosphotyrosine pro 46 150 6.1e-20Not foundNot found
PatternScanPS00383TYR_PHOSPHATASE_1 110 120 NAIPR016130Protein-tyrosine phosphatase, active site
HMMPfamPF00782DSPc 99 137 8.4e-13IPR000340Dual specificity phosphatase, catalytic domain
HMMPantherPTHR10159DUAL SPECIFICITY PRO 48 204 4.6e-82Not foundNot found
HMMPantherPTHR10159:SF19MAP KINASE PHOSPHATA 48 204 4.6e-82Not foundNot found
Gene3DG3DSA:3.90.190.10no description 47 158 1.9e-17Not foundNot found
HMMSmartSM00195no description 48 163 8e-05IPR020422Dual specificity phosphatase, subgroup, catalytic domain
Gene Ontology
GO TermGO TypeDescription
GO:0004725 Molecular Function protein tyrosine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008138 Molecular Function protein tyrosine/serine/threonine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
Q84JU41e-83IBR5_ARATH Protein-tyrosine-phosphatase IBR5 OS=Arabidopsis thaliana GN=IBR5 PE=1 SV=1
TrEMBL
Best HitE_value Description
A7PXB97e-65A7PXB9_VITVI Chromosome chr12 scaffold_36, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00025979001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002499658e-66K04459DUSP, MKP--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL7524(9 genes,8 taxa):Arabidopsis thalianaAT2G04550.1
ORTHOMCL7524(9 genes,8 taxa):Brassica oleraceaBol028137
ORTHOMCL7524(9 genes,8 taxa):Brassica oleraceaBol042513
ORTHOMCL7524(9 genes,8 taxa):Brassica rapaBra015154
ORTHOMCL7524(9 genes,8 taxa):Vitis viniferaGSVIVT01030535001
ORTHOMCL7524(9 genes,8 taxa):Oryza sativaOs06t0308100-01
ORTHOMCL7524(9 genes,8 taxa):Populus trichocarpaPOPTR_0014s15870.1
ORTHOMCL7524(9 genes,8 taxa):Sorghum bicolorSb10g011780.1
ORTHOMCL7524(9 genes,8 taxa):Carica papayaevm.TU.supercontig_132.52
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:5691801..5966414 (-)A.thalianaChr2:1445401..1592667 (+)14
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:4303825..6881871 (+)B.rapaA07:8817891..9848845 (-)60
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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