Basic Information
Gene Model:Bol028115
Gene Family:Transcription Factor Families
Chromosome:C03
Scaffold:Scaffold000074
Sequence:
 | 
Gene Structure
Nucleotide Length:1107 bp
Transcript Length:696 bp
Protein Length:231 aa
Strand:+
Location:C03: 8032334 : 8033440
Gene CDSs(4): 1-78 | 302-707 | 798-877 | 976-1107 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:2.40.330.10no description 3 106 6.7e-30Not foundNot found
HMMPfamPF02362B3 12 106 5.4e-22IPR003340Transcriptional factor B3
ProfileScanPS50863B3 11 104 13.733IPR003340Transcriptional factor B3
Segsegseg 124 133 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q8LAV58e-64REM20_ARATH B3 domain-containing protein REM20 OS=Arabidopsis thaliana GN=REM20 PE=2 SV=1
TrEMBL
Best HitE_value Description
C0SUV73e-16C0SUV7_ARATH Putative uncharacterized protein At1g16640 (Fragment) OS=Arabidopsis thaliana GN=At1g16640 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL16213(4 genes,4 taxa):Brassica oleraceaBol028115
ORTHOMCL16213(4 genes,4 taxa):Oryza sativaOs01t0723700-01
ORTHOMCL16213(4 genes,4 taxa):Sorghum bicolorSb03g033280.1
ORTHOMCL16213(4 genes,4 taxa):Carica papayaevm.TU.supercontig_128.16
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:7508825..8041776 (-)A.thalianaChr5:20715469..21288904 (+)56
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:6166313..8164709 (+)B.rapaA03:26001949..27390817 (+)187
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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