Basic Information
Gene Model:Bol028019
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000074
Sequence:
 | 
Gene Structure
Nucleotide Length:6886 bp
Transcript Length:2883 bp
Protein Length:960 aa
Strand:-
Location:C03: 7331962 : 7338847
Gene CDSs(27): 1-144 | 243-344 | 430-558 | 681-726 | 845-945 | 1027-1164 | 1284-1382 | 1463-1579 | 1778-1933 | 2157-2216 | 2346-2501 | 2594-2707 | 2884-2979 | 3072-3137 | 3219-3356 | 3610-3652 | 3809-3864 | 3960-4068 | 4182-4264 | 4341-4421 | 4641-4715 | 4789-4866 | 4939-5159 | 5443-5512 | 5872-5964 | 6064-6195 | 6707-6886 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00831no description 55 131 0.0054IPR004014ATPase, P-type cation-transporter, N-terminal
Gene3DG3DSA:3.40.1110.10no description 406 599 5.7e-24Not foundNot found
Gene3DG3DSA:1.20.1110.10no description 670 950 1.9e-52Not foundNot found
Gene3DG3DSA:2.70.150.10no description 53 280 2.4e-17Not foundNot found
HMMTigrTIGR01517ATPase-IIB_Ca: calci 36 953 2.5e-77IPR006408ATPase, P-type, calcium-transporting, PMCA-type
superfamilySSF81653Calcium ATPase, tran 199 300 3.5e-20Not foundNot found
superfamilySSF81660Metal cation-transpo 405 599 4.3e-29Not foundNot found
superfamilySSF56784HAD-like 579 746 1.5e-30Not foundNot found
superfamilySSF81665Calcium ATPase, tran 53 960 9e-58Not foundNot found
HMMPantherPTHR11939CATION-TRANSPORTING 61 823 0IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMPantherPTHR11939:SF69CATION-TRANSPORTING 61 823 0Not foundNot found
Segsegseg 763 776 NANot foundNot found
Segsegseg 788 793 NANot foundNot found
Segsegseg 833 847 NANot foundNot found
Segsegseg 902 924 NANot foundNot found
HMMPfamPF00689Cation_ATPase_C 780 958 4.1e-28IPR006068ATPase, P-type cation-transporter, C-terminal
HMMPfamPF00122E1-E2_ATPase 204 413 7e-35IPR008250ATPase, P-type, ATPase-associated region
HMMPfamPF00702Hydrolase 587 719 2.9e-07IPR005834Haloacid dehalogenase-like hydrolase
HMMPfamPF00690Cation_ATPase_N 68 125 2.5e-06IPR004014ATPase, P-type cation-transporter, N-terminal
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0005388 Molecular Function calcium-transporting ATPase activity
GO:0005524 Molecular Function ATP binding
GO:0006754 Biological Process ATP biosynthetic process
GO:0006812 Biological Process cation transport
GO:0006816 Biological Process calcium ion transport
GO:0008152 Biological Process metabolic process
GO:0015085 Molecular Function calcium ion transmembrane transporter activity
GO:0015662 Molecular Function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
GO:0016020 Cellular Component membrane
GO:0016820 Molecular Function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
Swiss-Prot
Best HitE_value Description
Q9LF790.0ACA8_ARATH Calcium-transporting ATPase 8, plasma membrane-type OS=Arabidopsis thaliana GN=ACA8 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9LVV10.0Q9LVV1_ARATH Ca2+-transporting ATPase-like protein OS=Arabidopsis thaliana PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G299000.0K01537E3.6.3.8Ca2+-transporting ATPase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL23(124 genes,8 taxa):Arabidopsis thalianaAT1G27770.1
ORTHOMCL23(124 genes,8 taxa):Arabidopsis thalianaAT2G22950.1
ORTHOMCL23(124 genes,8 taxa):Arabidopsis thalianaAT2G41560.1
ORTHOMCL23(124 genes,8 taxa):Arabidopsis thalianaAT3G21180.1
ORTHOMCL23(124 genes,8 taxa):Arabidopsis thalianaAT3G22910.1
ORTHOMCL23(124 genes,8 taxa):Arabidopsis thalianaAT3G57330.1
ORTHOMCL23(124 genes,8 taxa):Arabidopsis thalianaAT3G63380.1
ORTHOMCL23(124 genes,8 taxa):Arabidopsis thalianaAT4G29900.1
ORTHOMCL23(124 genes,8 taxa):Arabidopsis thalianaAT4G37640.1
ORTHOMCL23(124 genes,8 taxa):Arabidopsis thalianaAT5G53010.1
ORTHOMCL23(124 genes,8 taxa):Arabidopsis thalianaAT5G57110.1
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol005174
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol007578
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol008445
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol014249
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol014472
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol018605
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol018777
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol018801
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol020947
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol023300
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol026627
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol028018
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol028019
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol033624
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol037981
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol038394
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol038598
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol039587
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol039588
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol044435
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol044726
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra002762
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra003276
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra007319
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra010605
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra010917
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra011144
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra013942
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra016926
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra017841
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra023790
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra023899
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra024117
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra031259
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra033900
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra035649
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra039940
ORTHOMCL23(124 genes,8 taxa):Vitis viniferaGSVIVT01001466001
ORTHOMCL23(124 genes,8 taxa):Vitis viniferaGSVIVT01003129001
ORTHOMCL23(124 genes,8 taxa):Vitis viniferaGSVIVT01009350001
ORTHOMCL23(124 genes,8 taxa):Vitis viniferaGSVIVT01016158001
ORTHOMCL23(124 genes,8 taxa):Vitis viniferaGSVIVT01018058001
ORTHOMCL23(124 genes,8 taxa):Vitis viniferaGSVIVT01018059001
ORTHOMCL23(124 genes,8 taxa):Vitis viniferaGSVIVT01018061001
ORTHOMCL23(124 genes,8 taxa):Vitis viniferaGSVIVT01018065001
ORTHOMCL23(124 genes,8 taxa):Vitis viniferaGSVIVT01021801001
ORTHOMCL23(124 genes,8 taxa):Vitis viniferaGSVIVT01021804001
ORTHOMCL23(124 genes,8 taxa):Vitis viniferaGSVIVT01029283001
ORTHOMCL23(124 genes,8 taxa):Vitis viniferaGSVIVT01033238001
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs01t0939100-01
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs03t0203700-01
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs03t0203700-02
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs03t0616400-01
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs03t0616400-02
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs04t0605500-01
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs04t0605500-02
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs04t0605500-03
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs05t0495600-00
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs08t0517200-02
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs10t0418100-01
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs11t0140400-01
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs12t0136900-00
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs12t0586600-01
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs12t0586600-02
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0001s05790.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0002s04840.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0003s20280.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0003s20280.2
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0005s05420.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0005s19070.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0005s23710.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0006s04510.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0006s07240.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0007s09790.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0008s00850.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0008s00850.2
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0008s15890.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0010s09130.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0010s25730.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0013s03400.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0013s03620.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0013s03760.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0013s05960.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0014s01690.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0016s04240.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0016s04240.2
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0016s04240.3
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0018s13650.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0018s13650.2
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0018s13660.1
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb01g014620.1
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb01g021870.1
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb01g043620.1
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb02g028935.1
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb03g045370.1
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb04g005130.1
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb05g002380.1
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb06g027770.1
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb07g026810.1
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb07g028160.1
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb08g001260.1
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb08g019740.2
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb09g024300.1
ORTHOMCL23(124 genes,8 taxa):Carica papayaevm.TU.supercontig_115.62
ORTHOMCL23(124 genes,8 taxa):Carica papayaevm.TU.supercontig_117.89
ORTHOMCL23(124 genes,8 taxa):Carica papayaevm.TU.supercontig_182.10
ORTHOMCL23(124 genes,8 taxa):Carica papayaevm.TU.supercontig_197.19
ORTHOMCL23(124 genes,8 taxa):Carica papayaevm.TU.supercontig_197.20
ORTHOMCL23(124 genes,8 taxa):Carica papayaevm.TU.supercontig_44.131
ORTHOMCL23(124 genes,8 taxa):Carica papayaevm.TU.supercontig_52.122
ORTHOMCL23(124 genes,8 taxa):Carica papayaevm.TU.supercontig_6.24
ORTHOMCL23(124 genes,8 taxa):Carica papayaevm.TU.supercontig_67.6
ORTHOMCL23(124 genes,8 taxa):Carica papayaevm.TU.supercontig_67.8
Tandem Duplication
ClusterGene Num.Gene List
Cluster_10152Bol028018 Bol028019 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:6924920..7676729 (-)A.thalianaChr5:21288898..21881204 (+)45
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:3384356..7484156 (+)B.rapaA10:5981599..12607476 (+)333
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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