Basic Information
Gene Model:Bol028014
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000074
Sequence:
 | 
Gene Structure
Nucleotide Length:6966 bp
Transcript Length:2301 bp
Protein Length:766 aa
Strand:-
Location:C03: 7286484 : 7293449
Gene CDSs(17): 1-339 | 429-503 | 832-863 | 1148-1234 | 1441-1599 | 1710-1808 | 2279-2406 | 2609-2877 | 3232-3304 | 3756-3838 | 4093-4395 | 4678-4770 | 4857-4958 | 5052-5188 | 5892-6009 | 6641-6767 | 6890-6966 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 736 763 NANot foundNot found
Segsegseg 4 17 NANot foundNot found
Segsegseg 126 139 NANot foundNot found
Segsegseg 699 719 NANot foundNot found
Gene3DG3DSA:3.60.40.10no description 464 697 1.6e-58IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.40.50.720no description 20 243 4.2e-38IPR016040NAD(P)-binding domain
superfamilySSF81606Protein serine/threo 466 698 2.5e-61IPR001932Protein phosphatase 2C-related
superfamilySSF51735NAD(P)-binding Rossm 20 255 7e-39IPR016040NAD(P)-binding domain
HMMPfamPF00106adh_short 20 153 9.6e-07IPR002198Short-chain dehydrogenase/reductase SDR
HMMPfamPF00481PP2C 466 686 4.6e-46IPR014045Protein phosphatase 2C, N-terminal
HMMSmartSM00332no description 457 691 1e-62IPR001932Protein phosphatase 2C-related
HMMSmartSM00331no description 450 693 0.0018IPR001932Protein phosphatase 2C-related
HMMPantherPTHR19410:SF101PROTOCHLOROPHYLLIDE 1 268 7.1e-146Not foundNot found
HMMPantherPTHR19410SHORT-CHAIN DEHYDROG 1 268 7.1e-146IPR002198Short-chain dehydrogenase/reductase SDR
PatternScanPS01032PP2C 498 506 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0005488 Molecular Function binding
GO:0006470 Biological Process protein dephosphorylation
GO:0008152 Biological Process metabolic process
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
GO:0016491 Molecular Function oxidoreductase activity
Swiss-Prot
Best HitE_value Description
Q94AT11e-178P2C76_ARATH Probable protein phosphatase 2C 76 OS=Arabidopsis thaliana GN=At5g53140 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9FGM61e-138Q9FGM6_ARATH Protochlorophyllide reductase; oxidoreductase required for shoot apex development OS=Arabidopsis thaliana GN=At5g53100 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vcn:VOLCADRAFT_610582e-30K14497PP2Cprotein phosphatase 2C
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2704(14 genes,7 taxa):Arabidopsis thalianaAT5G53140.1
ORTHOMCL2704(14 genes,7 taxa):Brassica oleraceaBol028014
ORTHOMCL2704(14 genes,7 taxa):Brassica rapaBra029095
ORTHOMCL2704(14 genes,7 taxa):Vitis viniferaGSVIVT01028710001
ORTHOMCL2704(14 genes,7 taxa):Oryza sativaOs05t0587100-01
ORTHOMCL2704(14 genes,7 taxa):Populus trichocarpaPOPTR_0012s01680.1
ORTHOMCL2704(14 genes,7 taxa):Populus trichocarpaPOPTR_0012s01680.2
ORTHOMCL2704(14 genes,7 taxa):Populus trichocarpaPOPTR_0012s01680.3
ORTHOMCL2704(14 genes,7 taxa):Populus trichocarpaPOPTR_0012s01680.4
ORTHOMCL2704(14 genes,7 taxa):Populus trichocarpaPOPTR_0015s02100.1
ORTHOMCL2704(14 genes,7 taxa):Populus trichocarpaPOPTR_0015s02100.2
ORTHOMCL2704(14 genes,7 taxa):Populus trichocarpaPOPTR_0015s02100.3
ORTHOMCL2704(14 genes,7 taxa):Populus trichocarpaPOPTR_0015s02100.4
ORTHOMCL2704(14 genes,7 taxa):Sorghum bicolorSb09g030150.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:6924920..7676729 (-)A.thalianaChr5:21288898..21881204 (+)45
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:3384356..7484156 (+)B.rapaA10:5981599..12607476 (+)333
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
WAT5G531402154847321552470Chr5Subgenome_II324
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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