Basic Information
Gene Model:Bol027998
Gene Family:Protein Kinase Gene Families
Chromosome:C03
Scaffold:Scaffold000074
Sequence:
 | 
Gene Structure
Nucleotide Length:1961 bp
Transcript Length:1794 bp
Protein Length:597 aa
Strand:+
Location:C03: 7117029 : 7118989
Gene CDSs(2): 1-1168 | 1336-1961 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00560LRR_1 184 206 0.0067IPR001611Leucine-rich repeat
HMMPfamPF00069Pkinase 304 446 5.6e-09IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF00560LRR_1 162 183 1.4IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 138 160 0.0023IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 90 112 0.0012IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 114 136 0.022IPR001611Leucine-rich repeat
HMMPfamPF08263LRRNT_2 22 60 5.2e-12IPR013210Leucine-rich repeat, N-terminal
HMMSmartSM00219no description 304 564 3.7e-12IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 304 564 1.6e-10IPR002290Serine/threonine-protein kinase domain
Segsegseg 581 594 NANot foundNot found
Segsegseg 532 545 NANot foundNot found
superfamilySSF56112Protein kinase-like 272 564 1.8e-49IPR011009Protein kinase-like domain
superfamilySSF52058L domain-like 19 206 3.2e-38Not foundNot found
HMMPantherPTHR23258:SF470RECEPTOR-LIKE PROTEI 62 479 3.2e-138Not foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 62 479 3.2e-138Not foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 304 567 24.994IPR000719Protein kinase, catalytic domain
Gene3DG3DSA:3.30.200.20no description 308 380 1.4e-11Not foundNot found
Gene3DG3DSA:1.10.510.10no description 381 575 8.8e-33Not foundNot found
Gene3DG3DSA:3.80.10.10no description 19 207 1.3e-39Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005515 Molecular Function protein binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q9FK100.0Y5332_ARATH Probable inactive receptor kinase At5g53320 OS=Arabidopsis thaliana GN=At5g53320 PE=1 SV=1
TrEMBL
Best HitE_value Description
B3LFA90.0B3LFA9_ARATH At5g53320 OS=Arabidopsis thaliana GN=LRR-RLK PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G284402e-56K00924E2.7.1.---
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19485(3 genes,3 taxa):Arabidopsis thalianaAT5G53320.1
ORTHOMCL19485(3 genes,3 taxa):Brassica oleraceaBol027998
ORTHOMCL19485(3 genes,3 taxa):Brassica rapaBra029075
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:6924920..7676729 (-)A.thalianaChr5:21288898..21881204 (+)45
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:3384356..7484156 (+)B.rapaA10:5981599..12607476 (+)333
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
WAT5G533202163624121638398Chr5Subgenome_II324
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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