Basic Information
Gene Model:Bol027908
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000074
Sequence:
 | 
Gene Structure
Nucleotide Length:3192 bp
Transcript Length:2073 bp
Protein Length:690 aa
Strand:-
Location:C03: 6384396 : 6387587
Gene CDSs(8): 1-296 | 374-854 | 1211-1356 | 1435-1719 | 1797-1835 | 2201-2657 | 2742-2857 | 2940-3192 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.20.20.190no description 290 595 3.4e-44IPR017946PLC-like phosphodiesterase, TIM beta/alpha-barrel domain
Gene3DG3DSA:3.20.20.190no description 2 280 9.8e-26IPR017946PLC-like phosphodiesterase, TIM beta/alpha-barrel domain
superfamilySSF51695PLC-like phosphodies 10 270 6.3e-25IPR017946PLC-like phosphodiesterase, TIM beta/alpha-barrel domain
superfamilySSF51695PLC-like phosphodies 291 593 2.7e-45IPR017946PLC-like phosphodiesterase, TIM beta/alpha-barrel domain
HMMPfamPF03009GDPD 297 587 5.1e-16IPR004129Glycerophosphoryl diester phosphodiesterase
HMMPantherPTHR23344GLYCEROPHOSPHORYL DI 260 646 2.6e-49IPR004129Glycerophosphoryl diester phosphodiesterase
Gene Ontology
GO TermGO TypeDescription
GO:0006071 Biological Process glycerol metabolic process
GO:0006629 Biological Process lipid metabolic process
GO:0008081 Molecular Function phosphoric diester hydrolase activity
GO:0008889 Molecular Function glycerophosphodiester phosphodiesterase activity
Swiss-Prot
Best HitE_value Description
Q9FJ620.0GLPQ1_ARATH Probable glycerophosphoryl diester phosphodiesterase 1 OS=Arabidopsis thaliana GN=GPDL1 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9FZI00.0Q9FZI0_ARATH F1O19.6 protein OS=Arabidopsis thaliana GN=F1O19.6 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G742107e-21K01126E3.1.4.46, glpQglycerophosphoryl diester phosphodiesterase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL31(107 genes,8 taxa):Arabidopsis thalianaAT1G66910.1
ORTHOMCL31(107 genes,8 taxa):Arabidopsis thalianaAT1G66930.1
ORTHOMCL31(107 genes,8 taxa):Arabidopsis thalianaAT1G66970.1
ORTHOMCL31(107 genes,8 taxa):Arabidopsis thalianaAT1G66980.1
ORTHOMCL31(107 genes,8 taxa):Arabidopsis thalianaAT1G67000.1
ORTHOMCL31(107 genes,8 taxa):Arabidopsis thalianaAT3G20520.1
ORTHOMCL31(107 genes,8 taxa):Arabidopsis thalianaAT4G26690.1
ORTHOMCL31(107 genes,8 taxa):Arabidopsis thalianaAT5G38260.1
ORTHOMCL31(107 genes,8 taxa):Arabidopsis thalianaAT5G55480.1
ORTHOMCL31(107 genes,8 taxa):Arabidopsis thalianaAT5G58050.1
ORTHOMCL31(107 genes,8 taxa):Arabidopsis thalianaAT5G58170.1
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol003911
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol003912
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol004712
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol006791
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol007009
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol008329
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol012590
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol015555
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol015566
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol015658
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol016947
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol020230
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol026000
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol026653
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol027297
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol027908
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol029936
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol030799
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol039669
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol042301
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol042319
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol045080
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol045085
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol045087
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol045362
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol045363
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra000044
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra001790
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra002676
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra002904
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra002912
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra003643
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra004101
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra004198
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra004199
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra006785
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra012124
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra012561
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra014821
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra017457
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra019073
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra019074
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra019092
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra020384
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra020395
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra023743
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra023808
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra024731
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra025543
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra026409
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra027112
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra027113
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra028979
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra030085
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra033307
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra034036
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra034037
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra034038
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra034041
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra035209
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra035244
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra035289
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra035774
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra038428
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra038467
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra039626
ORTHOMCL31(107 genes,8 taxa):Vitis viniferaGSVIVT01003731001
ORTHOMCL31(107 genes,8 taxa):Vitis viniferaGSVIVT01008328001
ORTHOMCL31(107 genes,8 taxa):Vitis viniferaGSVIVT01030995001
ORTHOMCL31(107 genes,8 taxa):Vitis viniferaGSVIVT01037754001
ORTHOMCL31(107 genes,8 taxa):Oryza sativaOs01t0690600-01
ORTHOMCL31(107 genes,8 taxa):Oryza sativaOs01t0690800-01
ORTHOMCL31(107 genes,8 taxa):Oryza sativaOs02t0187400-01
ORTHOMCL31(107 genes,8 taxa):Oryza sativaOs02t0588500-02
ORTHOMCL31(107 genes,8 taxa):Oryza sativaOs04t0472300-01
ORTHOMCL31(107 genes,8 taxa):Oryza sativaOs04t0472300-02
ORTHOMCL31(107 genes,8 taxa):Oryza sativaOs08t0503200-01
ORTHOMCL31(107 genes,8 taxa):Populus trichocarpaPOPTR_0001s37160.1
ORTHOMCL31(107 genes,8 taxa):Populus trichocarpaPOPTR_0001s37170.1
ORTHOMCL31(107 genes,8 taxa):Populus trichocarpaPOPTR_0004s09630.1
ORTHOMCL31(107 genes,8 taxa):Populus trichocarpaPOPTR_0005s15310.1
ORTHOMCL31(107 genes,8 taxa):Populus trichocarpaPOPTR_0005s15340.1
ORTHOMCL31(107 genes,8 taxa):Populus trichocarpaPOPTR_0005s15370.1
ORTHOMCL31(107 genes,8 taxa):Populus trichocarpaPOPTR_0005s15410.1
ORTHOMCL31(107 genes,8 taxa):Populus trichocarpaPOPTR_0006s20170.1
ORTHOMCL31(107 genes,8 taxa):Populus trichocarpaPOPTR_0018s11890.1
ORTHOMCL31(107 genes,8 taxa):Populus trichocarpaPOPTR_0418s00210.1
ORTHOMCL31(107 genes,8 taxa):Sorghum bicolorSb02g039350.1
ORTHOMCL31(107 genes,8 taxa):Sorghum bicolorSb03g031670.1
ORTHOMCL31(107 genes,8 taxa):Sorghum bicolorSb03g031680.1
ORTHOMCL31(107 genes,8 taxa):Sorghum bicolorSb04g024440.1
ORTHOMCL31(107 genes,8 taxa):Sorghum bicolorSb06g019730.1
ORTHOMCL31(107 genes,8 taxa):Sorghum bicolorSb07g028050.1
ORTHOMCL31(107 genes,8 taxa):Sorghum bicolorSb10g025000.1
ORTHOMCL31(107 genes,8 taxa):Carica papayaevm.TU.supercontig_12.221
ORTHOMCL31(107 genes,8 taxa):Carica papayaevm.TU.supercontig_12.222
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:6166313..6839363 (-)A.thalianaChr5:21953787..22813263 (+)75
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:3384356..7484156 (+)B.rapaA10:5981599..12607476 (+)333
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
WAT5G554802247423022478132Chr5Subgenome_II324
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo