Basic Information
Gene Model:Bol027853
Gene Family:Transcription Factor Families
Chromosome:C04
Scaffold:Scaffold000075
Sequence:
 | 
Gene Structure
Nucleotide Length:1849 bp
Transcript Length:1524 bp
Protein Length:507 aa
Strand:-
Location:C04: 10167660 : 10169508
Gene CDSs(5): 1-106 | 191-343 | 425-802 | 871-947 | 1040-1849 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPIRPIRSF036392Response regulator, 1 506 6.4e-176IPR017053Response regulator, plant B-type
HMMSmartSM00448no description 10 122 9.6e-32IPR001789Signal transduction response regulator, receiver region
Gene3DG3DSA:1.10.10.60no description 184 248 5.3e-21IPR012287Homeodomain-related
Gene3DG3DSA:3.40.50.2300no description 10 127 1.6e-29Not foundNot found
ProfileScanPS50110RESPONSE_REGULATORY 11 126 33.356IPR001789Signal transduction response regulator, receiver region
Segsegseg 177 188 NANot foundNot found
Segsegseg 356 368 NANot foundNot found
Segsegseg 470 477 NANot foundNot found
Segsegseg 41 52 NANot foundNot found
HMMPantherPTHR23283:SF40TWO-COMPONENT SENSOR 9 130 2e-18Not foundNot found
HMMPantherPTHR23283SENSOR HISTIDINE KIN 9 130 2e-18Not foundNot found
superfamilySSF52172CheY-like 7 127 2.4e-35IPR011006CheY-like
superfamilySSF46689Homeodomain-like 184 248 2.9e-17IPR009057Homeodomain-like
HMMPfamPF00072Response_reg 12 123 1.1e-27IPR001789Signal transduction response regulator, receiver region
HMMPfamPF00249Myb_DNA-binding 190 241 9.8e-10IPR014778Myb, DNA-binding
HMMTigrTIGR01557myb_SHAQKYF: myb-lik 188 244 1.9e-27IPR006447Myb-like DNA-binding region, SHAQKYF class
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9FXD60.0ARR11_ARATH Two-component response regulator ARR11 OS=Arabidopsis thaliana GN=ARR11 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q0WRT00.0Q0WRT0_ARATH Response regulator 11 OS=Arabidopsis thaliana GN=At1g67710 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G677100.0K14491ARR-Btwo-component response regulator ARR-B family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL7429(9 genes,6 taxa):Arabidopsis thalianaAT1G67710.1
ORTHOMCL7429(9 genes,6 taxa):Brassica oleraceaBol026109
ORTHOMCL7429(9 genes,6 taxa):Brassica oleraceaBol027853
ORTHOMCL7429(9 genes,6 taxa):Brassica rapaBra004076
ORTHOMCL7429(9 genes,6 taxa):Brassica rapaBra004245
ORTHOMCL7429(9 genes,6 taxa):Vitis viniferaGSVIVT01010300001
ORTHOMCL7429(9 genes,6 taxa):Populus trichocarpaPOPTR_0008s18130.1
ORTHOMCL7429(9 genes,6 taxa):Populus trichocarpaPOPTR_0010s06290.1
ORTHOMCL7429(9 genes,6 taxa):Carica papayaevm.TU.supercontig_86.16
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:10035600..10824182 (+)A.thalianaChr1:25239117..25670182 (+)38
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:10035600..10984000 (+)B.rapaA07:16478276..16882670 (-)40
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G677102537675125379144Chr1Subgenome_II39
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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