Basic Information
Gene Model:Bol027820
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000075
Sequence:
 | 
Gene Structure
Nucleotide Length:2379 bp
Transcript Length:1293 bp
Protein Length:430 aa
Strand:+
Location:C04: 10580242 : 10582620
Gene CDSs(10): 1-156 | 252-296 | 561-668 | 766-909 | 1009-1226 | 1313-1441 | 1569-1620 | 1729-1778 | 1885-1968 | 2073-2379 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 165 196 NANot foundNot found
Segsegseg 141 157 NANot foundNot found
Segsegseg 86 93 NANot foundNot found
Segsegseg 35 56 NANot foundNot found
Segsegseg 3 23 NANot foundNot found
HMMPantherPTHR16950ZINC TRANSPORTER SLC 22 430 4e-243Not foundNot found
HMMPantherPTHR16950:SF2IAA-ALANINE RESISTAN 22 430 4e-243Not foundNot found
HMMPfamPF02535Zip 375 427 4e-07IPR003689Zinc/iron permease
HMMPfamPF02535Zip 102 362 2.2e-29IPR003689Zinc/iron permease
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
GO:0030001 Biological Process metal ion transport
GO:0046873 Molecular Function metal ion transmembrane transporter activity
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q9M6471e-175IAR1_ARATH IAA-alanine resistance protein 1 OS=Arabidopsis thaliana GN=IAR1 PE=2 SV=3
TrEMBL
Best HitE_value Description
B9S7E21e-109B9S7E2_RICCO Iaa-alanine resistance protein, putative OS=Ricinus communis GN=RCOM_0778070 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G681001e-175K14713
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL26071(2 genes,2 taxa):Brassica oleraceaBol027820
ORTHOMCL26071(2 genes,2 taxa):Brassica rapaBra004281
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:10035600..10824182 (+)A.thalianaChr1:25239117..25670182 (+)38
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:10035600..10984000 (+)B.rapaA07:16478276..16882670 (-)40
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G681002552120425524175Chr1Subgenome_II39
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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