Basic Information
Gene Model:Bol027532
Gene Family:Transcription Factor Families
Chromosome:C06
Scaffold:Scaffold000076
Sequence:
 | 
Gene Structure
Nucleotide Length:2224 bp
Transcript Length:1677 bp
Protein Length:558 aa
Strand:-
Location:C06: 1036795 : 1039018
Gene CDSs(2): 1-630 | 1178-2224 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:2.40.330.10no description 102 231 1.3e-36Not foundNot found
HMMPfamPF02362B3 114 219 8.4e-29IPR003340Transcriptional factor B3
HMMPfamPF06507Auxin_resp 274 349 3.6e-29IPR010525Auxin response factor
Segsegseg 480 491 NANot foundNot found
Segsegseg 382 393 NANot foundNot found
Segsegseg 78 99 NANot foundNot found
Segsegseg 222 255 NANot foundNot found
ProfileScanPS50863B3 115 217 12.182IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0009725 Biological Process response to hormone stimulus
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q84WU60.0ARFQ_ARATH Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RJC51e-134B9RJC5_RICCO Auxin response factor, putative OS=Ricinus communis GN=RCOM_1033160 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G198503e-54K14486K14486, ARFauxin response factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9363(8 genes,5 taxa):Arabidopsis thalianaAT1G77850.1
ORTHOMCL9363(8 genes,5 taxa):Brassica oleraceaBol003677
ORTHOMCL9363(8 genes,5 taxa):Brassica oleraceaBol027532
ORTHOMCL9363(8 genes,5 taxa):Brassica rapaBra003665
ORTHOMCL9363(8 genes,5 taxa):Brassica rapaBra015651
ORTHOMCL9363(8 genes,5 taxa):Populus trichocarpaPOPTR_0002s09050.1
ORTHOMCL9363(8 genes,5 taxa):Populus trichocarpaPOPTR_0005s16320.1
ORTHOMCL9363(8 genes,5 taxa):Carica papayaevm.TU.supercontig_49.120
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:777929..2462610 (-)A.thalianaChr1:6679281..7915003 (+)93
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:766229..2285457 (+)B.rapaA08:1852719..2468415 (+)44
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G778502927231329275419Chr1Subgenome_III(LF)587
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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