Basic Information
Gene Model:Bol027526
Gene Family:Transcription Factor Families
Chromosome:C06
Scaffold:Scaffold000076
Sequence:
 | 
Gene Structure
Nucleotide Length:8228 bp
Transcript Length:2376 bp
Protein Length:791 aa
Strand:-
Location:C06: 999565 : 1007792
Gene CDSs(17): 1-153 | 238-462 | 539-859 | 975-1052 | 1152-1211 | 1305-1406 | 1511-1713 | 2354-2463 | 6058-6432 | 6524-6585 | 6743-6815 | 6973-7097 | 7345-7422 | 7571-7642 | 7737-7810 | 7887-7986 | 8064-8228 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Coilcoilcoiled-coil 588 609 NANot foundNot found
Coilcoilcoiled-coil 532 567 NANot foundNot found
Coilcoilcoiled-coil 65 97 NANot foundNot found
HMMPantherPTHR21297DNA-DIRECTED RNA POL 61 360 1.3e-29Not foundNot found
ProfileScanPS50217BZIP 511 555 9.404IPR004827Basic-leucine zipper (bZIP) transcription factor
Segsegseg 498 507 NANot foundNot found
Segsegseg 537 559 NANot foundNot found
Segsegseg 70 81 NANot foundNot found
HMMSmartSM00338no description 504 567 2.6e-05IPR004827Basic-leucine zipper (bZIP) transcription factor
HMMPfamPF00170bZIP_1 509 541 1.3e-08IPR011616bZIP transcription factor, bZIP-1
PatternScanPS00036BZIP_BASIC 516 531 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
Q93ZE20.0TGA7_ARATH Transcription factor TGA7 OS=Arabidopsis thaliana GN=TGA7 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q0WQ440.0Q0WQ44_ARATH BZip transcription factor AtbZip50 OS=Arabidopsis thaliana GN=At1g77920 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G779200.0K14431TGAtranscription factor TGA
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15390(4 genes,4 taxa):Arabidopsis thalianaAT1G77920.1
ORTHOMCL15390(4 genes,4 taxa):Brassica oleraceaBol027526
ORTHOMCL15390(4 genes,4 taxa):Brassica rapaBra015646
ORTHOMCL15390(4 genes,4 taxa):Sorghum bicolorSb07g004900.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:777929..2462610 (-)A.thalianaChr1:6679281..7915003 (+)93
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:766229..2285457 (+)B.rapaA08:1852719..2468415 (+)44
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G778902929212329296160Chr1Subgenome_III(LF)587
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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