Basic Information
Gene Model:Bol027497
Gene Family:14-3-3 Gene Family
Chromosome:C06
Scaffold:Scaffold000076
Sequence:
 | 
Gene Structure
Nucleotide Length:1373 bp
Transcript Length:726 bp
Protein Length:241 aa
Strand:+
Location:C06: 811687 : 813059
Gene CDSs(5): 1-67 | 440-746 | 839-926 | 1015-1124 | 1220-1373 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF0024414-3-3 5 240 2.7e-88IPR00030814-3-3 protein
HMMSmartSM00101no description 5 241 1.3e-83IPR00030814-3-3 protein
HMMPIRPIRSF00086814-3-3 protein 3 240 9.9e-105IPR00030814-3-3 protein
HMMPantherPTHR1886014-3-3 2 233 1.7e-96IPR00030814-3-3 protein
superfamilySSF4844514-3-3 protein 2 235 4.6e-78IPR00030814-3-3 protein
Gene3DG3DSA:1.20.190.20no description 3 237 2.6e-77IPR00030814-3-3 protein
Gene Ontology
GO TermGO TypeDescription
GO:0019904 Molecular Function protein domain specific binding
Swiss-Prot
Best HitE_value Description
P483475e-7214310_ARATH 14-3-3-like protein GF14 epsilon OS=Arabidopsis thaliana GN=GRF10 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q84ZU03e-89Q84ZU0_ARATH 14-3-3 GF14 Pi protein OS=Arabidopsis thaliana GN=GRF13 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ppp:PHYPADRAFT_59677e-71K06630YWHAtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL17863(3 genes,3 taxa):Arabidopsis thalianaAT1G78220.1
ORTHOMCL17863(3 genes,3 taxa):Brassica oleraceaBol027497
ORTHOMCL17863(3 genes,3 taxa):Brassica rapaBra035020
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:777929..2462610 (-)A.thalianaChr1:6679281..7915003 (+)93
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:766229..2285457 (+)B.rapaA08:1852719..2468415 (+)44
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G782202942572129427181Chr1Subgenome_III(LF)587
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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