Basic Information
Gene Model:Bol027455
Gene Family:Protein Kinase Gene Families
Chromosome:C04
Scaffold:Scaffold000077
Sequence:
 | 
Gene Structure
Nucleotide Length:3050 bp
Transcript Length:2202 bp
Protein Length:733 aa
Strand:+
Location:C04: 21850179 : 21853228
Gene CDSs(3): 1-844 | 942-1109 | 1861-3050 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS01186EGF_2 310 325 NAIPR013032EGF-like region, conserved site
PatternScanPS01187EGF_CA 282 310 NAIPR018097EGF-like calcium-binding, conserved site
PatternScanPS00108PROTEIN_KINASE_ST 528 540 NAIPR008271Serine/threonine-protein kinase, active site
PatternScanPS00010ASX_HYDROXYL 301 312 NAIPR000152EGF-type aspartate/asparagine hydroxylation site
HMMSmartSM00219no description 407 677 1.2e-24IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 407 675 8.2e-31IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00181no description 234 281 0.38IPR006210EGF-like
HMMSmartSM00179no description 282 326 1e-08IPR001881EGF-like calcium-binding
HMMSmartSM00181no description 285 326 0.057IPR006210EGF-like
Gene3DG3DSA:2.10.25.10no description 283 327 0.0002Not foundNot found
Gene3DG3DSA:3.30.200.20no description 388 482 1.7e-22Not foundNot found
Gene3DG3DSA:1.10.510.10no description 485 688 2.4e-48Not foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 248 717 6.3e-193Not foundNot found
HMMPantherPTHR23258:SF444WALL-ASSOCIATED PROT 248 717 6.3e-193Not foundNot found
superfamilySSF57196EGF/Laminin 242 294 0.00014Not foundNot found
superfamilySSF57196EGF/Laminin 280 328 4.8e-10Not foundNot found
superfamilySSF56112Protein kinase-like 377 685 5.9e-77IPR011009Protein kinase-like domain
ProfileScanPS50026EGF_3 282 322 10.214IPR000742EGF-like, type 3
ProfileScanPS50026EGF_3 240 281 7.290IPR000742EGF-like, type 3
ProfileScanPS50011PROTEIN_KINASE_DOM 407 690 37.672IPR000719Protein kinase, catalytic domain
Segsegseg 103 117 NANot foundNot found
HMMPfamPF00069Pkinase 407 605 1.4e-38IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF07645EGF_CA 282 325 7.5e-11IPR013091EGF calcium-binding
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005509 Molecular Function calcium ion binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q9LMN70.0WAK5_ARATH Wall-associated receptor kinase 5 OS=Arabidopsis thaliana GN=WAK5 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7QLU31e-175A7QLU3_VITVI Chromosome chr18 scaffold_122, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00001785001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G594203e-55K00924E2.7.1.---
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL87(65 genes,8 taxa):Arabidopsis thalianaAT1G21210.1
ORTHOMCL87(65 genes,8 taxa):Arabidopsis thalianaAT1G21230.1
ORTHOMCL87(65 genes,8 taxa):Arabidopsis thalianaAT1G21240.1
ORTHOMCL87(65 genes,8 taxa):Arabidopsis thalianaAT1G21250.1
ORTHOMCL87(65 genes,8 taxa):Arabidopsis thalianaAT1G21270.1
ORTHOMCL87(65 genes,8 taxa):Arabidopsis thalianaAT3G25490.1
ORTHOMCL87(65 genes,8 taxa):Brassica oleraceaBol007036
ORTHOMCL87(65 genes,8 taxa):Brassica oleraceaBol007037
ORTHOMCL87(65 genes,8 taxa):Brassica oleraceaBol014314
ORTHOMCL87(65 genes,8 taxa):Brassica oleraceaBol020649
ORTHOMCL87(65 genes,8 taxa):Brassica oleraceaBol020652
ORTHOMCL87(65 genes,8 taxa):Brassica oleraceaBol020654
ORTHOMCL87(65 genes,8 taxa):Brassica oleraceaBol025489
ORTHOMCL87(65 genes,8 taxa):Brassica oleraceaBol025490
ORTHOMCL87(65 genes,8 taxa):Brassica oleraceaBol027455
ORTHOMCL87(65 genes,8 taxa):Brassica oleraceaBol027456
ORTHOMCL87(65 genes,8 taxa):Brassica oleraceaBol027457
ORTHOMCL87(65 genes,8 taxa):Brassica rapaBra012272
ORTHOMCL87(65 genes,8 taxa):Brassica rapaBra012273
ORTHOMCL87(65 genes,8 taxa):Brassica rapaBra016426
ORTHOMCL87(65 genes,8 taxa):Brassica rapaBra016427
ORTHOMCL87(65 genes,8 taxa):Brassica rapaBra016428
ORTHOMCL87(65 genes,8 taxa):Brassica rapaBra025882
ORTHOMCL87(65 genes,8 taxa):Brassica rapaBra025883
ORTHOMCL87(65 genes,8 taxa):Brassica rapaBra025884
ORTHOMCL87(65 genes,8 taxa):Brassica rapaBra025886
ORTHOMCL87(65 genes,8 taxa):Vitis viniferaGSVIVT01021671001
ORTHOMCL87(65 genes,8 taxa):Vitis viniferaGSVIVT01021673001
ORTHOMCL87(65 genes,8 taxa):Vitis viniferaGSVIVT01021675001
ORTHOMCL87(65 genes,8 taxa):Vitis viniferaGSVIVT01021682001
ORTHOMCL87(65 genes,8 taxa):Vitis viniferaGSVIVT01021685001
ORTHOMCL87(65 genes,8 taxa):Vitis viniferaGSVIVT01021686001
ORTHOMCL87(65 genes,8 taxa):Vitis viniferaGSVIVT01021694001
ORTHOMCL87(65 genes,8 taxa):Oryza sativaOs02t0111600-01
ORTHOMCL87(65 genes,8 taxa):Oryza sativaOs02t0623600-01
ORTHOMCL87(65 genes,8 taxa):Oryza sativaOs02t0624100-00
ORTHOMCL87(65 genes,8 taxa):Oryza sativaOs04t0598900-01
ORTHOMCL87(65 genes,8 taxa):Oryza sativaOs04t0599000-02
ORTHOMCL87(65 genes,8 taxa):Oryza sativaOs06t0142500-00
ORTHOMCL87(65 genes,8 taxa):Oryza sativaOs06t0170100-00
ORTHOMCL87(65 genes,8 taxa):Oryza sativaOs06t0705200-00
ORTHOMCL87(65 genes,8 taxa):Oryza sativaOs06t0706600-00
ORTHOMCL87(65 genes,8 taxa):Populus trichocarpaPOPTR_0002s07650.1
ORTHOMCL87(65 genes,8 taxa):Populus trichocarpaPOPTR_0002s07660.1
ORTHOMCL87(65 genes,8 taxa):Populus trichocarpaPOPTR_0002s07670.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb01g013060.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb02g002020.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb02g002110.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb02g021500.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb03g014450.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb04g000880.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb04g026470.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb04g037220.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb06g022700.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb06g022710.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb06g030770.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb06g030960.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb06g030970.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb08g018520.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb10g004800.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb10g004810.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb10g004830.1
ORTHOMCL87(65 genes,8 taxa):Carica papayaevm.TU.supercontig_1461.1
ORTHOMCL87(65 genes,8 taxa):Carica papayaevm.TU.supercontig_64.155
ORTHOMCL87(65 genes,8 taxa):Carica papayaevm.TU.supercontig_64.156
Tandem Duplication
ClusterGene Num.Gene List
Cluster_515Bol027453 Bol027454 Bol027455 Bol027456 Bol027457 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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