Basic Information
Gene Model:Bol027419
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000077
Sequence:
 | 
Gene Structure
Nucleotide Length:1805 bp
Transcript Length:795 bp
Protein Length:264 aa
Strand:+
Location:C04: 21584200 : 21586004
Gene CDSs(9): 1-77 | 156-345 | 430-467 | 550-644 | 743-822 | 899-955 | 1041-1133 | 1553-1627 | 1716-1805 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Coilcoilcoiled-coil 38 66 NANot foundNot found
Coilcoilcoiled-coil 4 25 NANot foundNot found
ProfileScanPS50192T_SNARE 145 207 11.528IPR000727Target SNARE coiled-coil region
HMMPantherPTHR21230VESICLE TRANSPORT V- 7 241 8e-129Not foundNot found
HMMPantherPTHR21230:SF2NOVEL PLANT SNARE 7 241 8e-129Not foundNot found
HMMSmartSM00397no description 140 207 5.8e-09IPR000727Target SNARE coiled-coil region
Segsegseg 231 244 NANot foundNot found
Segsegseg 95 112 NANot foundNot found
Gene3DG3DSA:1.20.5.110no description 145 209 5e-05Not foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q944A91e-132NPS11_ARATH Novel plant SNARE 11 OS=Arabidopsis thaliana GN=NPSN11 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9RUR41e-114B9RUR4_RICCO Novel plant snare, putative OS=Ricinus communis GN=RCOM_0855800 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G351901e-132K08494NSPNnovel plant SNARE
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3759(12 genes,8 taxa):Arabidopsis thalianaAT2G35190.1
ORTHOMCL3759(12 genes,8 taxa):Brassica oleraceaBol027419
ORTHOMCL3759(12 genes,8 taxa):Brassica oleraceaBol037821
ORTHOMCL3759(12 genes,8 taxa):Brassica oleraceaBol039808
ORTHOMCL3759(12 genes,8 taxa):Brassica rapaBra005361
ORTHOMCL3759(12 genes,8 taxa):Brassica rapaBra017331
ORTHOMCL3759(12 genes,8 taxa):Brassica rapaBra023003
ORTHOMCL3759(12 genes,8 taxa):Vitis viniferaGSVIVT01013276001
ORTHOMCL3759(12 genes,8 taxa):Oryza sativaOs06t0715100-02
ORTHOMCL3759(12 genes,8 taxa):Populus trichocarpaPOPTR_0003s08330.1
ORTHOMCL3759(12 genes,8 taxa):Sorghum bicolorSb10g030120.1
ORTHOMCL3759(12 genes,8 taxa):Carica papayaevm.TU.supercontig_76.5
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:18992445..21825121 (+)A.thalianaChr2:13722427..14926591 (+)187
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:19201735..21825121 (+)B.rapaA05:21833239..23208305 (-)183
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G351901483062614833319Chr2Subgenome_III(LF)205
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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