Basic Information
Gene Model:Bol027404
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000077
Sequence:
 | 
Gene Structure
Nucleotide Length:1107 bp
Transcript Length:1107 bp
Protein Length:368 aa
Strand:-
Location:C04: 21480097 : 21481203
Gene CDSs(1): 1-1107 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR14155:SF2RING FINGER PROTEIN 128 169 1.8e-15Not foundNot found
HMMPantherPTHR14155RING FINGER PROTEIN 128 169 1.8e-15Not foundNot found
ProfileScanPS50089ZF_RING_2 128 170 12.475IPR001841Zinc finger, RING-type
HMMPfamPF00097zf-C3HC4 128 169 1.1e-09IPR018957Zinc finger, C3HC4 RING-type
superfamilySSF57850RING/U-box 121 175 8.9e-16Not foundNot found
Gene3DG3DSA:3.30.40.10no description 121 175 6.3e-14Not foundNot found
Segsegseg 317 339 NANot foundNot found
Segsegseg 287 310 NANot foundNot found
Segsegseg 15 22 NANot foundNot found
Segsegseg 45 57 NANot foundNot found
Segsegseg 178 187 NANot foundNot found
HMMSmartSM00184no description 128 169 9.4e-05IPR001841Zinc finger, RING-type
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
O647631e-125ATL2G_ARATH RING-H2 finger protein ATL2G OS=Arabidopsis thaliana GN=ATL2G PE=2 SV=1
TrEMBL
Best HitE_value Description
Q4TU261e-124Q4TU26_ARATH Putative RING zinc finger protein OS=Arabidopsis thaliana GN=At2g35000 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
cfa:4920511e-09K10629RNF128, GRAILE3 ubiquitin-protein ligase RNF128
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL18161(3 genes,3 taxa):Arabidopsis thalianaAT2G35000.1
ORTHOMCL18161(3 genes,3 taxa):Brassica oleraceaBol027404
ORTHOMCL18161(3 genes,3 taxa):Brassica rapaBra005374
Tandem Duplication
ClusterGene Num.Gene List
Cluster_16012Bol027403 Bol027404 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:18992445..21825121 (+)A.thalianaChr2:13722427..14926591 (+)187
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:19201735..21825121 (+)B.rapaA05:21833239..23208305 (-)183
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G350001475157414753319Chr2Subgenome_III(LF)205
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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