Basic Information
Gene Model:Bol027377
Gene Family:Protein Kinase Gene Families
Chromosome:C04
Scaffold:Scaffold000077
Sequence:
 | 
Gene Structure
Nucleotide Length:1618 bp
Transcript Length:1320 bp
Protein Length:439 aa
Strand:-
Location:C04: 21201006 : 21202623
Gene CDSs(2): 1-763 | 1062-1618 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00108PROTEIN_KINASE_ST 204 216 NAIPR008271Serine/threonine-protein kinase, active site
HMMPantherPTHR22985SERINE/THREONINE PRO 45 417 9.6e-182Not foundNot found
HMMPantherPTHR22985:SF88NONPHOTOTROPIC HYPOC 45 417 9.6e-182Not foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 78 397 42.718IPR000719Protein kinase, catalytic domain
HMMPfamPF00069Pkinase 78 397 1.5e-64IPR017442Serine/threonine-protein kinase-like domain
Segsegseg 241 256 NANot foundNot found
Segsegseg 224 235 NANot foundNot found
Gene3DG3DSA:1.10.510.10no description 135 417 7.9e-56Not foundNot found
superfamilySSF56112Protein kinase-like 53 424 1.3e-79IPR011009Protein kinase-like domain
HMMSmartSM00219no description 78 391 1.5e-07IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 78 397 5.8e-83IPR002290Serine/threonine-protein kinase domain
Coilcoilcoiled-coil 111 132 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q0DCT81e-106G11A_ORYSJ Protein kinase G11A OS=Oryza sativa subsp. japonica GN=Os06g0291600 PE=2 SV=1
TrEMBL
Best HitE_value Description
O040990.0O04099_BRACM Putative serine/threonine protein kinase OS=Brassica campestris GN=Bcpk1 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G477501e-106K08286E2.7.11.-protein-serine/threonine kinase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11493(7 genes,5 taxa):Arabidopsis thalianaAT2G34650.1
ORTHOMCL11493(7 genes,5 taxa):Brassica oleraceaBol027377
ORTHOMCL11493(7 genes,5 taxa):Brassica oleraceaBol037850
ORTHOMCL11493(7 genes,5 taxa):Brassica rapaBra005403
ORTHOMCL11493(7 genes,5 taxa):Brassica rapaBra021925
ORTHOMCL11493(7 genes,5 taxa):Oryza sativaOs12t0614600-01
ORTHOMCL11493(7 genes,5 taxa):Sorghum bicolorSb08g021520.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:18992445..21825121 (+)A.thalianaChr2:13722427..14926591 (+)187
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:20698366..21423286 (+)B.rapaA09:33682621..34782443 (+)17
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G346501458976014591788Chr2Subgenome_III(LF)205
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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