Basic Information
Gene Model:Bol027304
Gene Family:Transcription Factor Families
Chromosome:C04
Scaffold:Scaffold000077
Sequence:
 | 
Gene Structure
Nucleotide Length:2645 bp
Transcript Length:1734 bp
Protein Length:577 aa
Strand:-
Location:C04: 20533558 : 20536202
Gene CDSs(8): 1-723 | 828-903 | 995-1114 | 1241-1403 | 1653-1737 | 1874-2056 | 2137-2193 | 2319-2645 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 354 369 NANot foundNot found
Segsegseg 425 433 NANot foundNot found
Segsegseg 487 501 NANot foundNot found
Segsegseg 20 51 NANot foundNot found
Segsegseg 136 150 NANot foundNot found
Gene3DG3DSA:2.40.330.10no description 147 225 1.1e-20Not foundNot found
HMMPfamPF06507Auxin_resp 255 337 1.1e-53IPR010525Auxin response factor
HMMPfamPF02362B3 159 226 2.2e-17IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0009725 Biological Process response to hormone stimulus
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
O236610.0ARFC_ARATH Auxin response factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2
TrEMBL
Best HitE_value Description
B9S9291e-153B9S929_RICCO Auxin response factor, putative OS=Ricinus communis GN=RCOM_1011410 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G338600.0K14486K14486, ARFauxin response factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2997(13 genes,8 taxa):Arabidopsis thalianaAT2G33860.1
ORTHOMCL2997(13 genes,8 taxa):Brassica oleraceaBol027304
ORTHOMCL2997(13 genes,8 taxa):Brassica rapaBra005465
ORTHOMCL2997(13 genes,8 taxa):Brassica rapaBra021885
ORTHOMCL2997(13 genes,8 taxa):Vitis viniferaGSVIVT01021128001
ORTHOMCL2997(13 genes,8 taxa):Oryza sativaOs01t0670800-01
ORTHOMCL2997(13 genes,8 taxa):Oryza sativaOs05t0563400-01
ORTHOMCL2997(13 genes,8 taxa):Oryza sativaOs05t0563400-02
ORTHOMCL2997(13 genes,8 taxa):Populus trichocarpaPOPTR_0004s04970.1
ORTHOMCL2997(13 genes,8 taxa):Populus trichocarpaPOPTR_0011s05830.1
ORTHOMCL2997(13 genes,8 taxa):Sorghum bicolorSb03g030740.1
ORTHOMCL2997(13 genes,8 taxa):Sorghum bicolorSb09g028450.1
ORTHOMCL2997(13 genes,8 taxa):Carica papayaevm.TU.supercontig_7.3
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:18992445..21825121 (+)A.thalianaChr2:13722427..14926591 (+)187
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:20262307..21234643 (+)B.rapaA08:7124540..7836645 (-)22
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G338601432526914328978Chr2Subgenome_III(LF)205
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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