Basic Information
Gene Model:Bol027224
Gene Family:Transcription Factor Families
Chromosome:C07
Scaffold:Scaffold000078
Sequence:
 | 
Gene Structure
Nucleotide Length:636 bp
Transcript Length:636 bp
Protein Length:211 aa
Strand:+
Location:C07: 1482200 : 1482835
Gene CDSs(1): 1-636 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 122 138 NANot foundNot found
Segsegseg 175 190 NANot foundNot found
Segsegseg 69 78 NANot foundNot found
HMMPantherPTHR12565STEROL REGULATORY EL 122 162 2.7e-06Not foundNot found
HMMPantherPTHR12565:SF7CENTROMERE-BINDING P 122 162 2.7e-06Not foundNot found
superfamilySSF47459HLH, helix-loop-heli 108 182 7e-12IPR011598Helix-loop-helix DNA-binding
HMMSmartSM00353no description 118 167 7e-14IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMPfamPF00010HLH 115 162 2.7e-05IPR001092Basic helix-loop-helix dimerisation region bHLH
ProfileScanPS50888HLH 105 162 11.798IPR001092Basic helix-loop-helix dimerisation region bHLH
Coilcoilcoiled-coil 151 172 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9FHA71e-67HEC1_ARATH Transcription factor HEC1 OS=Arabidopsis thaliana GN=HEC1 PE=1 SV=1
TrEMBL
Best HitE_value Description
C6TJ689e-48C6TJ68_SOYBN Putative uncharacterized protein OS=Glycine max PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL14575(5 genes,4 taxa):Brassica oleraceaBol027224
ORTHOMCL14575(5 genes,4 taxa):Brassica rapaBra012128
ORTHOMCL14575(5 genes,4 taxa):Oryza sativaOs09t0455300-01
ORTHOMCL14575(5 genes,4 taxa):Oryza sativaOs09t0455300-02
ORTHOMCL14575(5 genes,4 taxa):Sorghum bicolorSb02g026530.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:655311..1749656 (+)A.thalianaChr5:26445086..26856941 (+)69
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:1197500..1747316 (+)B.rapaA09:19022150..19361782 (-)12
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
XAT5G670602676612826767250Chr5Subgenome_III(LF)74
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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