Basic Information
Gene Model:Bol027217
Gene Family:Transcription Factor Families
Chromosome:C07
Scaffold:Scaffold000078
Sequence:
 | 
Gene Structure
Nucleotide Length:1237 bp
Transcript Length:984 bp
Protein Length:327 aa
Strand:+
Location:C07: 1347752 : 1348988
Gene CDSs(4): 1-108 | 200-650 | 725-843 | 932-1237 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 3 15 NANot foundNot found
Gene3DG3DSA:2.40.330.10no description 13 114 1.4e-27Not foundNot found
HMMPfamPF02362B3 213 314 8e-12IPR003340Transcriptional factor B3
HMMPfamPF02362B3 22 114 2.8e-21IPR003340Transcriptional factor B3
ProfileScanPS50863B3 211 312 11.364IPR003340Transcriptional factor B3
ProfileScanPS50863B3 21 112 14.790IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9FGD21e-101Y5698_ARATH Putative B3 domain-containing protein At5g66980 OS=Arabidopsis thaliana GN=At5g66980 PE=3 SV=1
TrEMBL
Best HitE_value Description
A5B3C82e-30A5B3C8_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011465 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15999(4 genes,4 taxa):Arabidopsis thalianaAT5G66980.1
ORTHOMCL15999(4 genes,4 taxa):Brassica oleraceaBol027217
ORTHOMCL15999(4 genes,4 taxa):Brassica rapaBra012121
ORTHOMCL15999(4 genes,4 taxa):Carica papayaevm.TU.supercontig_15.69
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:655311..1749656 (+)A.thalianaChr5:26445086..26856941 (+)69
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:1197500..1747316 (+)B.rapaA09:19022150..19361782 (-)12
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
XAT5G669802674156326742826Chr5Subgenome_III(LF)74
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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