Basic Information
Gene Model:Bol027151
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000078
Sequence:
 | 
Gene Structure
Nucleotide Length:1570 bp
Transcript Length:1122 bp
Protein Length:373 aa
Strand:-
Location:C07: 708235 : 709804
Gene CDSs(6): 1-196 | 276-427 | 519-927 | 1018-1134 | 1235-1297 | 1386-1570 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103481Multidrug resistance 44 155 1.5e-08Not foundNot found
superfamilySSF103481Multidrug resistance 221 332 4.8e-09Not foundNot found
HMMPfamPF00892DUF6 19 152 2.5e-08IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 196 325 6.8e-13IPR000620Protein of unknown function DUF6, transmembrane
Segsegseg 288 301 NANot foundNot found
Segsegseg 172 183 NANot foundNot found
Segsegseg 186 197 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1631e-1035NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8LAY01e-174Q8LAY0_ARATH Nodulin-like protein OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15673(4 genes,4 taxa):Arabidopsis thalianaAT3G53210.1
ORTHOMCL15673(4 genes,4 taxa):Brassica oleraceaBol027151
ORTHOMCL15673(4 genes,4 taxa):Brassica rapaBra012063
ORTHOMCL15673(4 genes,4 taxa):Carica papayaevm.TU.supercontig_6.189
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:655311..1749656 (+)A.thalianaChr5:26445086..26856941 (+)69
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:660890..1690268 (+)B.rapaA09:9535603..9846111 (-)37
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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