Basic Information
Gene Model:Bol027147
Gene Family:Sulfurtransferasese/Rhodanese Gene Family
Chromosome:C07
Scaffold:Scaffold000078
Sequence:
 | 
Gene Structure
Nucleotide Length:695 bp
Transcript Length:381 bp
Protein Length:126 aa
Strand:+
Location:C07: 660890 : 661584
Gene CDSs(5): 1-80 | 155-234 | 311-381 | 448-501 | 600-695 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.250.10no description 5 119 1.5e-24IPR001763Rhodanese-like
HMMSmartSM00450no description 8 116 2.9e-12IPR001763Rhodanese-like
ProfileScanPS50206RHODANESE_3 17 119 15.944IPR001763Rhodanese-like
HMMPantherPTHR13253FAMILY NOT NAMED 73 113 9.7e-06Not foundNot found
HMMPantherPTHR13253:SF2gb def: Hypothetical 73 113 9.7e-06Not foundNot found
superfamilySSF52821Rhodanese/Cell cycle 3 119 1.5e-21IPR001763Rhodanese-like
HMMPfamPF00581Rhodanese 9 113 1.8e-13IPR001763Rhodanese-like
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q391297e-26STR16_ARATH Thiosulfate sulfurtransferase OS=Arabidopsis thaliana GN=STR16 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q8LCX92e-55Q8LCX9_ARATH Senescence-associated protein OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ngr:NAEGRDRAFT_394814e-06K11996MOCS3, UBA4, moeBadenylyltransferase and sulfurtransferase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2955(13 genes,8 taxa):Arabidopsis thalianaAT2G17850.1
ORTHOMCL2955(13 genes,8 taxa):Arabidopsis thalianaAT5G66170.2
ORTHOMCL2955(13 genes,8 taxa):Brassica oleraceaBol000638
ORTHOMCL2955(13 genes,8 taxa):Brassica oleraceaBol012458
ORTHOMCL2955(13 genes,8 taxa):Brassica oleraceaBol027147
ORTHOMCL2955(13 genes,8 taxa):Brassica rapaBra012056
ORTHOMCL2955(13 genes,8 taxa):Brassica rapaBra031805
ORTHOMCL2955(13 genes,8 taxa):Vitis viniferaGSVIVT01018758001
ORTHOMCL2955(13 genes,8 taxa):Oryza sativaOs04t0249600-01
ORTHOMCL2955(13 genes,8 taxa):Oryza sativaOs04t0249600-02
ORTHOMCL2955(13 genes,8 taxa):Populus trichocarpaPOPTR_0005s11330.1
ORTHOMCL2955(13 genes,8 taxa):Sorghum bicolorSb04g000410.1
ORTHOMCL2955(13 genes,8 taxa):Carica papayaevm.TU.supercontig_6.266
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:655311..1749656 (+)A.thalianaChr5:26445086..26856941 (+)69
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:613462..1749656 (+)B.rapaA07:2103175..2684817 (+)74
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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