Basic Information
Gene Model:Bol027010
Gene Family:Protein Kinase Gene Families
Chromosome:C08
Scaffold:Scaffold000079
Sequence:
 | 
Gene Structure
Nucleotide Length:2631 bp
Transcript Length:2049 bp
Protein Length:682 aa
Strand:+
Location:C08: 10406618 : 10409248
Gene CDSs(6): 1-169 | 247-323 | 399-663 | 757-814 | 902-1187 | 1438-2631 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR23258SERINE-THREONINE PRO 51 673 1.3e-241Not foundNot found
HMMPantherPTHR23258:SF203SERINE THREONINE KIN 51 673 1.3e-241Not foundNot found
superfamilySSF52402Adenine nucleotide a 12 143 5.6e-08Not foundNot found
superfamilySSF56112Protein kinase-like 346 636 6.2e-69IPR011009Protein kinase-like domain
Coilcoilcoiled-coil 293 321 NANot foundNot found
HMMPfamPF00069Pkinase 376 578 3.2e-40IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF00582Usp 8 146 4.3e-08IPR006016UspA
Gene3DG3DSA:3.30.200.20no description 357 448 2.6e-20Not foundNot found
Gene3DG3DSA:1.10.510.10no description 451 635 2.8e-43Not foundNot found
Segsegseg 306 321 NANot foundNot found
Segsegseg 365 371 NANot foundNot found
Segsegseg 249 283 NANot foundNot found
PatternScanPS00108PROTEIN_KINASE_ST 494 506 NAIPR008271Serine/threonine-protein kinase, active site
HMMSmartSM00220no description 376 639 1.8e-28IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00219no description 376 642 4.3e-18IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
ProfileScanPS50011PROTEIN_KINASE_DOM 376 639 36.329IPR000719Protein kinase, catalytic domain
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
GO:0006950 Biological Process response to stress
Swiss-Prot
Best HitE_value Description
Q9SW111e-100PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q9FZP20.0Q9FZP2_ARATH Receptor-like protein kinase OS=Arabidopsis thaliana PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL94(63 genes,8 taxa):Arabidopsis thalianaAT1G16760.1
ORTHOMCL94(63 genes,8 taxa):Arabidopsis thalianaAT1G78940.1
ORTHOMCL94(63 genes,8 taxa):Arabidopsis thalianaAT2G07020.1
ORTHOMCL94(63 genes,8 taxa):Arabidopsis thalianaAT2G24370.1
ORTHOMCL94(63 genes,8 taxa):Arabidopsis thalianaAT3G20200.1
ORTHOMCL94(63 genes,8 taxa):Arabidopsis thalianaAT4G31230.1
ORTHOMCL94(63 genes,8 taxa):Arabidopsis thalianaAT5G12000.1
ORTHOMCL94(63 genes,8 taxa):Arabidopsis thalianaAT5G26150.1
ORTHOMCL94(63 genes,8 taxa):Arabidopsis thalianaAT5G35380.1
ORTHOMCL94(63 genes,8 taxa):Brassica oleraceaBol003574
ORTHOMCL94(63 genes,8 taxa):Brassica oleraceaBol004745
ORTHOMCL94(63 genes,8 taxa):Brassica oleraceaBol009809
ORTHOMCL94(63 genes,8 taxa):Brassica oleraceaBol027010
ORTHOMCL94(63 genes,8 taxa):Brassica oleraceaBol029282
ORTHOMCL94(63 genes,8 taxa):Brassica oleraceaBol033715
ORTHOMCL94(63 genes,8 taxa):Brassica oleraceaBol038252
ORTHOMCL94(63 genes,8 taxa):Brassica oleraceaBol040297
ORTHOMCL94(63 genes,8 taxa):Brassica oleraceaBol040481
ORTHOMCL94(63 genes,8 taxa):Brassica oleraceaBol041930
ORTHOMCL94(63 genes,8 taxa):Brassica oleraceaBol042556
ORTHOMCL94(63 genes,8 taxa):Brassica oleraceaBol045777
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra007857
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra008387
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra008921
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra013166
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra016631
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra020547
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra023358
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra024016
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra026027
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra026707
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra032100
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra035078
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra035539
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra035805
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra040779
ORTHOMCL94(63 genes,8 taxa):Vitis viniferaGSVIVT01016815001
ORTHOMCL94(63 genes,8 taxa):Vitis viniferaGSVIVT01029530001
ORTHOMCL94(63 genes,8 taxa):Vitis viniferaGSVIVT01032261001
ORTHOMCL94(63 genes,8 taxa):Vitis viniferaGSVIVT01035414001
ORTHOMCL94(63 genes,8 taxa):Vitis viniferaGSVIVT01035572001
ORTHOMCL94(63 genes,8 taxa):Oryza sativaOs01t0581400-01
ORTHOMCL94(63 genes,8 taxa):Oryza sativaOs02t0218400-01
ORTHOMCL94(63 genes,8 taxa):Oryza sativaOs02t0787200-01
ORTHOMCL94(63 genes,8 taxa):Populus trichocarpaPOPTR_0001s20560.1
ORTHOMCL94(63 genes,8 taxa):Populus trichocarpaPOPTR_0006s07810.1
ORTHOMCL94(63 genes,8 taxa):Populus trichocarpaPOPTR_0006s24180.1
ORTHOMCL94(63 genes,8 taxa):Populus trichocarpaPOPTR_0006s29380.1
ORTHOMCL94(63 genes,8 taxa):Populus trichocarpaPOPTR_0007s15230.1
ORTHOMCL94(63 genes,8 taxa):Populus trichocarpaPOPTR_0014s00490.1
ORTHOMCL94(63 genes,8 taxa):Populus trichocarpaPOPTR_0014s01190.1
ORTHOMCL94(63 genes,8 taxa):Populus trichocarpaPOPTR_0018s04050.1
ORTHOMCL94(63 genes,8 taxa):Populus trichocarpaPOPTR_0018s07600.1
ORTHOMCL94(63 genes,8 taxa):Sorghum bicolorSb03g026030.1
ORTHOMCL94(63 genes,8 taxa):Sorghum bicolorSb04g007620.1
ORTHOMCL94(63 genes,8 taxa):Sorghum bicolorSb04g035360.1
ORTHOMCL94(63 genes,8 taxa):Sorghum bicolorSb10g006130.1
ORTHOMCL94(63 genes,8 taxa):Carica papayaevm.TU.supercontig_115.24
ORTHOMCL94(63 genes,8 taxa):Carica papayaevm.TU.supercontig_139.31
ORTHOMCL94(63 genes,8 taxa):Carica papayaevm.TU.supercontig_148.8
ORTHOMCL94(63 genes,8 taxa):Carica papayaevm.TU.supercontig_176.23
ORTHOMCL94(63 genes,8 taxa):Carica papayaevm.TU.supercontig_66.100
ORTHOMCL94(63 genes,8 taxa):Carica papayaevm.TU.supercontig_7.150
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:10401504..10552921 (-)A.thalianaChr5:13358414..13602266 (+)11
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
SAT5G353801359342913596293Chr5Subgenome_II11
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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