Basic Information
Gene Model:Bol026930
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000080
Sequence:
 | 
Gene Structure
Nucleotide Length:3056 bp
Transcript Length:2001 bp
Protein Length:666 aa
Strand:-
Location:C05: 15618559 : 15621614
Gene CDSs(9): 1-578 | 652-862 | 927-1041 | 1119-1361 | 1450-1550 | 2055-2250 | 2335-2446 | 2527-2780 | 2866-3056 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00082Peptidase_S8 401 501 6.1e-12IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPfamPF02225PA 259 362 7.6e-20IPR003137Protease-associated PA
HMMPfamPF05922Inhibitor_I9 36 110 5.7e-18IPR010259Proteinase inhibitor I9, subtilisin propeptide
superfamilySSF54897Protease propeptides 35 110 3e-07IPR009020Proteinase inhibitor, propeptide
superfamilySSF52743Subtilisin-like 92 516 8e-46IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
PatternScanPS00138SUBTILASE_SER 440 450 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPantherPTHR10795:SF17SUBTILISIN-LIKE PROT 35 658 3.6e-227Not foundNot found
HMMPantherPTHR10795SUBTILISIN/KEXIN-REL 35 658 3.6e-227IPR015500Peptidase S8, subtilisin-related
Gene3DG3DSA:3.40.50.200no description 140 510 6.4e-37IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Segsegseg 4 19 NANot foundNot found
Segsegseg 272 284 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004252 Molecular Function serine-type endopeptidase activity
GO:0006508 Biological Process proteolysis
GO:0042802 Molecular Function identical protein binding
GO:0043086 Biological Process negative regulation of catalytic activity
Swiss-Prot
Best HitE_value Description
O653512e-70SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q2V4M50.0Q2V4M5_ARATH Putative uncharacterized protein At1g20160.2 OS=Arabidopsis thaliana GN=At1g20160 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1253(18 genes,8 taxa):Arabidopsis thalianaAT1G20150.1
ORTHOMCL1253(18 genes,8 taxa):Arabidopsis thalianaAT1G20160.1
ORTHOMCL1253(18 genes,8 taxa):Brassica oleraceaBol002894
ORTHOMCL1253(18 genes,8 taxa):Brassica oleraceaBol026458
ORTHOMCL1253(18 genes,8 taxa):Brassica oleraceaBol026930
ORTHOMCL1253(18 genes,8 taxa):Brassica rapaBra012217
ORTHOMCL1253(18 genes,8 taxa):Brassica rapaBra025798
ORTHOMCL1253(18 genes,8 taxa):Brassica rapaBra034327
ORTHOMCL1253(18 genes,8 taxa):Vitis viniferaGSVIVT01009968001
ORTHOMCL1253(18 genes,8 taxa):Vitis viniferaGSVIVT01027368001
ORTHOMCL1253(18 genes,8 taxa):Oryza sativaOs01t0278950-00
ORTHOMCL1253(18 genes,8 taxa):Oryza sativaOs09t0482660-01
ORTHOMCL1253(18 genes,8 taxa):Populus trichocarpaPOPTR_0002s02010.1
ORTHOMCL1253(18 genes,8 taxa):Populus trichocarpaPOPTR_0003s18830.1
ORTHOMCL1253(18 genes,8 taxa):Populus trichocarpaPOPTR_0005s26460.1
ORTHOMCL1253(18 genes,8 taxa):Sorghum bicolorSb02g009600.1
ORTHOMCL1253(18 genes,8 taxa):Sorghum bicolorSb03g011300.1
ORTHOMCL1253(18 genes,8 taxa):Carica papayaevm.TU.supercontig_26.289
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:14221242..16366585 (+)A.thalianaChr1:27954231..28717416 (+)69
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:13735892..17408196 (+)B.rapaA08:1888770..2871761 (-)119
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
BAT1G2016069907946993972Chr1Subgenome_III(LF)147
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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