Basic Information
Gene Model:Bol026901
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000080
Sequence:
 | 
Gene Structure
Nucleotide Length:3878 bp
Transcript Length:2448 bp
Protein Length:815 aa
Strand:+
Location:C05: 15370815 : 15374692
Gene CDSs(11): 1-124 | 261-376 | 454-552 | 629-685 | 762-917 | 1252-1400 | 1812-1934 | 2033-2244 | 2307-3397 | 3482-3672 | 3749-3878 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF06507Auxin_resp 217 300 6.4e-56IPR010525Auxin response factor
ProfileScanPS50962IAA_ARF 706 788 25.347IPR011525Aux/IAA-ARF-dimerisation
Gene3DG3DSA:2.40.330.10no description 142 207 1.3e-06Not foundNot found
Segsegseg 390 397 NANot foundNot found
Segsegseg 668 677 NANot foundNot found
Segsegseg 14 29 NANot foundNot found
Segsegseg 215 222 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0009725 Biological Process response to hormone stimulus
GO:0045449 Biological Process regulation of transcription
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
P930240.0ARFE_ARATH Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3
TrEMBL
Best HitE_value Description
B9R8650.0B9R865_RICCO Auxin response factor, putative OS=Ricinus communis GN=RCOM_1597120 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2826(13 genes,7 taxa):Arabidopsis thalianaAT1G19850.1
ORTHOMCL2826(13 genes,7 taxa):Brassica oleraceaBol002918
ORTHOMCL2826(13 genes,7 taxa):Brassica oleraceaBol023586
ORTHOMCL2826(13 genes,7 taxa):Brassica oleraceaBol026901
ORTHOMCL2826(13 genes,7 taxa):Brassica rapaBra012190
ORTHOMCL2826(13 genes,7 taxa):Brassica rapaBra016492
ORTHOMCL2826(13 genes,7 taxa):Brassica rapaBra025775
ORTHOMCL2826(13 genes,7 taxa):Oryza sativaOs04t0664400-01
ORTHOMCL2826(13 genes,7 taxa):Oryza sativaOs04t0664400-02
ORTHOMCL2826(13 genes,7 taxa):Populus trichocarpaPOPTR_0002s02630.1
ORTHOMCL2826(13 genes,7 taxa):Populus trichocarpaPOPTR_0005s25800.1
ORTHOMCL2826(13 genes,7 taxa):Sorghum bicolorSb06g031900.1
ORTHOMCL2826(13 genes,7 taxa):Carica papayaevm.TU.supercontig_26.24
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:14221242..16366585 (+)A.thalianaChr1:27954231..28717416 (+)69
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:13735892..17408196 (+)B.rapaA08:1888770..2871761 (-)119
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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