Basic Information
Gene Model:Bol026834
Gene Family:Transcription Factor Families
Chromosome:C05
Scaffold:Scaffold000080
Sequence:
 | 
Gene Structure
Nucleotide Length:4216 bp
Transcript Length:3162 bp
Protein Length:1053 aa
Strand:-
Location:C05: 14709969 : 14714184
Gene CDSs(11): 1-184 | 269-459 | 541-2186 | 2256-2755 | 2833-2923 | 3021-3105 | 3192-3347 | 3450-3506 | 3593-3688 | 3775-3887 | 4174-4216 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF06507Auxin_resp 252 334 5.5e-56IPR010525Auxin response factor
HMMPfamPF02362B3 125 230 1.4e-33IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 113 242 4.4e-42Not foundNot found
ProfileScanPS50962IAA_ARF 926 1008 28.871IPR011525Aux/IAA-ARF-dimerisation
ProfileScanPS50863B3 126 228 12.492IPR003340Transcriptional factor B3
Segsegseg 614 695 NANot foundNot found
Segsegseg 815 819 NANot foundNot found
Segsegseg 586 596 NANot foundNot found
Segsegseg 552 562 NANot foundNot found
Segsegseg 235 243 NANot foundNot found
Segsegseg 250 258 NANot foundNot found
Segsegseg 483 547 NANot foundNot found
Segsegseg 30 43 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0009725 Biological Process response to hormone stimulus
GO:0045449 Biological Process regulation of transcription
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
Q8RYC80.0ARFS_ARATH Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2
TrEMBL
Best HitE_value Description
B9RR610.0B9RR61_RICCO Auxin response factor, putative OS=Ricinus communis GN=RCOM_0710450 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL424(29 genes,8 taxa):Arabidopsis thalianaAT1G19220.1
ORTHOMCL424(29 genes,8 taxa):Arabidopsis thalianaAT5G20730.1
ORTHOMCL424(29 genes,8 taxa):Brassica oleraceaBol013157
ORTHOMCL424(29 genes,8 taxa):Brassica oleraceaBol026834
ORTHOMCL424(29 genes,8 taxa):Brassica oleraceaBol035795
ORTHOMCL424(29 genes,8 taxa):Brassica oleraceaBol036113
ORTHOMCL424(29 genes,8 taxa):Brassica rapaBra002327
ORTHOMCL424(29 genes,8 taxa):Brassica rapaBra016517
ORTHOMCL424(29 genes,8 taxa):Brassica rapaBra020125
ORTHOMCL424(29 genes,8 taxa):Brassica rapaBra025720
ORTHOMCL424(29 genes,8 taxa):Vitis viniferaGSVIVT01015035001
ORTHOMCL424(29 genes,8 taxa):Vitis viniferaGSVIVT01032251001
ORTHOMCL424(29 genes,8 taxa):Oryza sativaOs02t0141100-00
ORTHOMCL424(29 genes,8 taxa):Oryza sativaOs06t0702600-01
ORTHOMCL424(29 genes,8 taxa):Oryza sativaOs08t0520550-01
ORTHOMCL424(29 genes,8 taxa):Populus trichocarpaPOPTR_0006s07740.1
ORTHOMCL424(29 genes,8 taxa):Populus trichocarpaPOPTR_0006s14070.1
ORTHOMCL424(29 genes,8 taxa):Populus trichocarpaPOPTR_0006s14070.2
ORTHOMCL424(29 genes,8 taxa):Populus trichocarpaPOPTR_0006s14070.3
ORTHOMCL424(29 genes,8 taxa):Populus trichocarpaPOPTR_0006s14070.4
ORTHOMCL424(29 genes,8 taxa):Populus trichocarpaPOPTR_0006s14070.5
ORTHOMCL424(29 genes,8 taxa):Populus trichocarpaPOPTR_0018s07420.1
ORTHOMCL424(29 genes,8 taxa):Populus trichocarpaPOPTR_0018s14300.1
ORTHOMCL424(29 genes,8 taxa):Sorghum bicolorSb04g003240.1
ORTHOMCL424(29 genes,8 taxa):Sorghum bicolorSb07g027080.1
ORTHOMCL424(29 genes,8 taxa):Sorghum bicolorSb10g006440.1
ORTHOMCL424(29 genes,8 taxa):Sorghum bicolorSb10g029130.1
ORTHOMCL424(29 genes,8 taxa):Carica papayaevm.TU.supercontig_115.29
ORTHOMCL424(29 genes,8 taxa):Carica papayaevm.TU.supercontig_261.2
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:14221242..16366585 (+)A.thalianaChr1:27954231..28717416 (+)69
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:13735892..14968809 (+)B.rapaA09:4146452..4572882 (+)45
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1922066280686633087Chr1Subgenome_III(LF)90
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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