Basic Information
Gene Model:Bol026821
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000080
Sequence:
 | 
Gene Structure
Nucleotide Length:4431 bp
Transcript Length:639 bp
Protein Length:212 aa
Strand:-
Location:C05: 14609168 : 14613598
Gene CDSs(5): 1-265 | 361-431 | 527-604 | 4109-4185 | 4284-4431 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.50.2300no description 18 152 1.2e-22Not foundNot found
HMMSmartSM00448no description 24 151 1.9e-20IPR001789Signal transduction response regulator, receiver region
Segsegseg 175 191 NANot foundNot found
HMMPfamPF00072Response_reg 26 148 2.1e-24IPR001789Signal transduction response regulator, receiver region
HMMPantherPTHR23283SENSOR HISTIDINE KIN 23 156 2.4e-15Not foundNot found
HMMPantherPTHR23283:SF40TWO-COMPONENT SENSOR 23 156 2.4e-15Not foundNot found
ProfileScanPS50110RESPONSE_REGULATORY 25 152 26.864IPR001789Signal transduction response regulator, receiver region
superfamilySSF52172CheY-like 21 153 7.9e-27IPR011006CheY-like
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9ZWS71e-88ARR7_ARATH Two-component response regulator ARR7 OS=Arabidopsis thaliana GN=ARR7 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q2HIJ62e-87Q2HIJ6_ARATH At1g19050 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL17418(3 genes,3 taxa):Arabidopsis thalianaAT1G19050.1
ORTHOMCL17418(3 genes,3 taxa):Brassica oleraceaBol026821
ORTHOMCL17418(3 genes,3 taxa):Brassica rapaBra025708
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:14221242..16366585 (+)A.thalianaChr1:27954231..28717416 (+)69
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:13735892..14968809 (+)B.rapaA09:4146452..4572882 (+)45
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1905065778336579178Chr1Subgenome_III(LF)90
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo