Basic Information
Gene Model:Bol026627
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000082
Sequence:
 | 
Gene Structure
Nucleotide Length:5857 bp
Transcript Length:3273 bp
Protein Length:1090 aa
Strand:+
Location:C03: 24041474 : 24047330
Gene CDSs(29): 1-106 | 191-282 | 352-459 | 539-676 | 765-810 | 921-1021 | 1103-1240 | 1358-1573 | 1651-1815 | 1916-2143 | 2290-2400 | 2569-2667 | 2752-2817 | 2892-3029 | 3106-3189 | 3267-3309 | 3398-3453 | 3532-3640 | 3715-3797 | 3890-4045 | 4121-4282 | 4366-4436 | 4544-4613 | 4708-4797 | 4893-5024 | 5135-5256 | 5336-5378 | 5473-5589 | 5675-5857 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMTigrTIGR01494ATPase_P-type: ATPas 771 910 2.3e-34IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMTigrTIGR01494ATPase_P-type: ATPas 436 523 5.1e-24IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMTigrTIGR01494ATPase_P-type: ATPas 240 333 9.2e-19IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMTigrTIGR01517ATPase-IIB_Ca: calci 119 1069 0IPR006408ATPase, P-type, calcium-transporting, PMCA-type
superfamilySSF81665Calcium ATPase, tran 148 1073 7.7e-121Not foundNot found
superfamilySSF56784HAD-like 489 859 1.5e-47Not foundNot found
superfamilySSF81653Calcium ATPase, tran 271 371 1.1e-25Not foundNot found
PatternScanPS00154ATPASE_E1_E2 498 504 NAIPR018303ATPase, P-type phosphorylation site
HMMPantherPTHR11939CATION-TRANSPORTING 27 930 0IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMPantherPTHR11939:SF73CATION-TRANSPORTING 27 930 0Not foundNot found
HMMPfamPF00689Cation_ATPase_C 887 1066 4.3e-57IPR006068ATPase, P-type cation-transporter, C-terminal
HMMPfamPF00122E1-E2_ATPase 240 488 1.1e-70IPR008250ATPase, P-type, ATPase-associated region
HMMPfamPF00702Hydrolase 492 826 3e-17IPR005834Haloacid dehalogenase-like hydrolase
HMMPfamPF00690Cation_ATPase_N 141 226 1.7e-16IPR004014ATPase, P-type cation-transporter, N-terminal
Segsegseg 444 454 NANot foundNot found
Segsegseg 870 882 NANot foundNot found
Segsegseg 114 129 NANot foundNot found
Segsegseg 209 224 NANot foundNot found
Segsegseg 397 409 NANot foundNot found
Segsegseg 1 16 NANot foundNot found
Segsegseg 29 47 NANot foundNot found
Gene3DG3DSA:1.20.1110.10no description 314 511 8.9e-41Not foundNot found
Gene3DG3DSA:1.20.1110.10no description 777 1066 3.7e-86Not foundNot found
HMMSmartSM00831no description 149 226 0.00053IPR004014ATPase, P-type cation-transporter, N-terminal
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0005388 Molecular Function calcium-transporting ATPase activity
GO:0005524 Molecular Function ATP binding
GO:0006754 Biological Process ATP biosynthetic process
GO:0006812 Biological Process cation transport
GO:0006816 Biological Process calcium ion transport
GO:0008152 Biological Process metabolic process
GO:0015085 Molecular Function calcium ion transmembrane transporter activity
GO:0015662 Molecular Function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
GO:0016020 Cellular Component membrane
GO:0016820 Molecular Function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
Swiss-Prot
Best HitE_value Description
Q9LU410.0ACA9_ARATH Calcium-transporting ATPase 9, plasma membrane-type OS=Arabidopsis thaliana GN=ACA9 PE=2 SV=2
TrEMBL
Best HitE_value Description
B9HK600.0B9HK60_POPTR Autoinhibited calcium ATPase OS=Populus trichocarpa GN=POPTRDRAFT_765045 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL23(124 genes,8 taxa):Arabidopsis thalianaAT1G27770.1
ORTHOMCL23(124 genes,8 taxa):Arabidopsis thalianaAT2G22950.1
ORTHOMCL23(124 genes,8 taxa):Arabidopsis thalianaAT2G41560.1
ORTHOMCL23(124 genes,8 taxa):Arabidopsis thalianaAT3G21180.1
ORTHOMCL23(124 genes,8 taxa):Arabidopsis thalianaAT3G22910.1
ORTHOMCL23(124 genes,8 taxa):Arabidopsis thalianaAT3G57330.1
ORTHOMCL23(124 genes,8 taxa):Arabidopsis thalianaAT3G63380.1
ORTHOMCL23(124 genes,8 taxa):Arabidopsis thalianaAT4G29900.1
ORTHOMCL23(124 genes,8 taxa):Arabidopsis thalianaAT4G37640.1
ORTHOMCL23(124 genes,8 taxa):Arabidopsis thalianaAT5G53010.1
ORTHOMCL23(124 genes,8 taxa):Arabidopsis thalianaAT5G57110.1
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol005174
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol007578
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol008445
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol014249
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol014472
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol018605
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol018777
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol018801
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol020947
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol023300
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol026627
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol028018
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol028019
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol033624
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol037981
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol038394
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol038598
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol039587
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol039588
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol044435
ORTHOMCL23(124 genes,8 taxa):Brassica oleraceaBol044726
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra002762
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra003276
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra007319
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra010605
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra010917
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra011144
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra013942
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra016926
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra017841
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra023790
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra023899
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra024117
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra031259
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra033900
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra035649
ORTHOMCL23(124 genes,8 taxa):Brassica rapaBra039940
ORTHOMCL23(124 genes,8 taxa):Vitis viniferaGSVIVT01001466001
ORTHOMCL23(124 genes,8 taxa):Vitis viniferaGSVIVT01003129001
ORTHOMCL23(124 genes,8 taxa):Vitis viniferaGSVIVT01009350001
ORTHOMCL23(124 genes,8 taxa):Vitis viniferaGSVIVT01016158001
ORTHOMCL23(124 genes,8 taxa):Vitis viniferaGSVIVT01018058001
ORTHOMCL23(124 genes,8 taxa):Vitis viniferaGSVIVT01018059001
ORTHOMCL23(124 genes,8 taxa):Vitis viniferaGSVIVT01018061001
ORTHOMCL23(124 genes,8 taxa):Vitis viniferaGSVIVT01018065001
ORTHOMCL23(124 genes,8 taxa):Vitis viniferaGSVIVT01021801001
ORTHOMCL23(124 genes,8 taxa):Vitis viniferaGSVIVT01021804001
ORTHOMCL23(124 genes,8 taxa):Vitis viniferaGSVIVT01029283001
ORTHOMCL23(124 genes,8 taxa):Vitis viniferaGSVIVT01033238001
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs01t0939100-01
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs03t0203700-01
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs03t0203700-02
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs03t0616400-01
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs03t0616400-02
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs04t0605500-01
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs04t0605500-02
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs04t0605500-03
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs05t0495600-00
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs08t0517200-02
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs10t0418100-01
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs11t0140400-01
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs12t0136900-00
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs12t0586600-01
ORTHOMCL23(124 genes,8 taxa):Oryza sativaOs12t0586600-02
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0001s05790.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0002s04840.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0003s20280.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0003s20280.2
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0005s05420.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0005s19070.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0005s23710.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0006s04510.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0006s07240.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0007s09790.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0008s00850.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0008s00850.2
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0008s15890.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0010s09130.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0010s25730.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0013s03400.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0013s03620.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0013s03760.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0013s05960.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0014s01690.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0016s04240.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0016s04240.2
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0016s04240.3
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0018s13650.1
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0018s13650.2
ORTHOMCL23(124 genes,8 taxa):Populus trichocarpaPOPTR_0018s13660.1
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb01g014620.1
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb01g021870.1
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb01g043620.1
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb02g028935.1
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb03g045370.1
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb04g005130.1
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb05g002380.1
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb06g027770.1
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb07g026810.1
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb07g028160.1
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb08g001260.1
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb08g019740.2
ORTHOMCL23(124 genes,8 taxa):Sorghum bicolorSb09g024300.1
ORTHOMCL23(124 genes,8 taxa):Carica papayaevm.TU.supercontig_115.62
ORTHOMCL23(124 genes,8 taxa):Carica papayaevm.TU.supercontig_117.89
ORTHOMCL23(124 genes,8 taxa):Carica papayaevm.TU.supercontig_182.10
ORTHOMCL23(124 genes,8 taxa):Carica papayaevm.TU.supercontig_197.19
ORTHOMCL23(124 genes,8 taxa):Carica papayaevm.TU.supercontig_197.20
ORTHOMCL23(124 genes,8 taxa):Carica papayaevm.TU.supercontig_44.131
ORTHOMCL23(124 genes,8 taxa):Carica papayaevm.TU.supercontig_52.122
ORTHOMCL23(124 genes,8 taxa):Carica papayaevm.TU.supercontig_6.24
ORTHOMCL23(124 genes,8 taxa):Carica papayaevm.TU.supercontig_67.6
ORTHOMCL23(124 genes,8 taxa):Carica papayaevm.TU.supercontig_67.8
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:23215407..24458591 (+)A.thalianaChr3:6803072..7716343 (+)81
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:23477697..24150742 (+)B.rapaA05:8717044..9502830 (-)11
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G2118074255197432200Chr3Subgenome_II468
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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