Basic Information
Gene Model:Bol026458
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000083
Sequence:
 | 
Gene Structure
Nucleotide Length:5931 bp
Transcript Length:2283 bp
Protein Length:760 aa
Strand:+
Location:C04: 30338569 : 30344499
Gene CDSs(10): 1-560 | 723-921 | 1140-1500 | 1594-1694 | 2409-2910 | 3344-3455 | 4114-4275 | 5215-5312 | 5618-5709 | 5836-5931 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR10795:SF17SUBTILISIN-LIKE PROT 32 760 4.3e-295Not foundNot found
HMMPantherPTHR10795SUBTILISIN/KEXIN-REL 32 760 4.3e-295IPR015500Peptidase S8, subtilisin-related
Segsegseg 6 28 NANot foundNot found
Segsegseg 519 533 NANot foundNot found
PatternScanPS00138SUBTILASE_SER 540 550 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
superfamilySSF54897Protease propeptides 29 112 2.7e-07IPR009020Proteinase inhibitor, propeptide
superfamilySSF52743Subtilisin-like 94 616 1.1e-70IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPfamPF00082Peptidase_S8 128 601 3.6e-11IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPfamPF02225PA 362 466 5.4e-15IPR003137Protease-associated PA
HMMPfamPF05922Inhibitor_I9 32 112 3.8e-22IPR010259Proteinase inhibitor I9, subtilisin propeptide
Gene3DG3DSA:3.40.50.200no description 140 610 1.4e-67IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Gene Ontology
GO TermGO TypeDescription
GO:0004252 Molecular Function serine-type endopeptidase activity
GO:0006508 Biological Process proteolysis
GO:0042802 Molecular Function identical protein binding
GO:0043086 Biological Process negative regulation of catalytic activity
Swiss-Prot
Best HitE_value Description
O653511e-135SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9SHW10.0B9SHW1_RICCO Xylem serine proteinase 1, putative OS=Ricinus communis GN=RCOM_0622480 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1253(18 genes,8 taxa):Arabidopsis thalianaAT1G20150.1
ORTHOMCL1253(18 genes,8 taxa):Arabidopsis thalianaAT1G20160.1
ORTHOMCL1253(18 genes,8 taxa):Brassica oleraceaBol002894
ORTHOMCL1253(18 genes,8 taxa):Brassica oleraceaBol026458
ORTHOMCL1253(18 genes,8 taxa):Brassica oleraceaBol026930
ORTHOMCL1253(18 genes,8 taxa):Brassica rapaBra012217
ORTHOMCL1253(18 genes,8 taxa):Brassica rapaBra025798
ORTHOMCL1253(18 genes,8 taxa):Brassica rapaBra034327
ORTHOMCL1253(18 genes,8 taxa):Vitis viniferaGSVIVT01009968001
ORTHOMCL1253(18 genes,8 taxa):Vitis viniferaGSVIVT01027368001
ORTHOMCL1253(18 genes,8 taxa):Oryza sativaOs01t0278950-00
ORTHOMCL1253(18 genes,8 taxa):Oryza sativaOs09t0482660-01
ORTHOMCL1253(18 genes,8 taxa):Populus trichocarpaPOPTR_0002s02010.1
ORTHOMCL1253(18 genes,8 taxa):Populus trichocarpaPOPTR_0003s18830.1
ORTHOMCL1253(18 genes,8 taxa):Populus trichocarpaPOPTR_0005s26460.1
ORTHOMCL1253(18 genes,8 taxa):Sorghum bicolorSb02g009600.1
ORTHOMCL1253(18 genes,8 taxa):Sorghum bicolorSb03g011300.1
ORTHOMCL1253(18 genes,8 taxa):Carica papayaevm.TU.supercontig_26.289
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:30013331..32585741 (+)A.thalianaChr2:11329870..12685087 (+)118
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:30146190..32100648 (+)B.rapaA07:1081313..2011461 (-)54
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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