Basic Information
Gene Model:Bol026387
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000083
Sequence:
 | 
Gene Structure
Nucleotide Length:1761 bp
Transcript Length:1761 bp
Protein Length:586 aa
Strand:+
Location:C04: 30998578 : 31000338
Gene CDSs(1): 1-1761 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR21576UNCHARACTERIZED NODU 2 574 1.3e-178Not foundNot found
HMMPfamPF07690MFS_1 351 492 2.2e-07IPR011701Major facilitator superfamily MFS-1
HMMPfamPF06813Nodulin-like 18 263 9.8e-164IPR010658Nodulin-like
superfamilySSF103473MFS general substrat 1 569 4.6e-31IPR016196Major facilitator superfamily, general substrate transporter
Gene Ontology
GO TermGO TypeDescription
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q6CGU84e-06MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica GN=MCH1 PE=3 SV=1
TrEMBL
Best HitE_value Description
Q9ZUV40.0Q9ZUV4_ARATH Nodulin-like protein OS=Arabidopsis thaliana GN=At2g28120/F24D13.9 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL285(35 genes,8 taxa):Arabidopsis thalianaAT2G28120.1
ORTHOMCL285(35 genes,8 taxa):Arabidopsis thalianaAT2G39210.1
ORTHOMCL285(35 genes,8 taxa):Brassica oleraceaBol013414
ORTHOMCL285(35 genes,8 taxa):Brassica oleraceaBol016263
ORTHOMCL285(35 genes,8 taxa):Brassica oleraceaBol020414
ORTHOMCL285(35 genes,8 taxa):Brassica oleraceaBol025331
ORTHOMCL285(35 genes,8 taxa):Brassica oleraceaBol026387
ORTHOMCL285(35 genes,8 taxa):Brassica rapaBra000124
ORTHOMCL285(35 genes,8 taxa):Brassica rapaBra005059
ORTHOMCL285(35 genes,8 taxa):Brassica rapaBra011976
ORTHOMCL285(35 genes,8 taxa):Brassica rapaBra017085
ORTHOMCL285(35 genes,8 taxa):Brassica rapaBra034390
ORTHOMCL285(35 genes,8 taxa):Vitis viniferaGSVIVT01016196001
ORTHOMCL285(35 genes,8 taxa):Vitis viniferaGSVIVT01016197001
ORTHOMCL285(35 genes,8 taxa):Vitis viniferaGSVIVT01016200001
ORTHOMCL285(35 genes,8 taxa):Vitis viniferaGSVIVT01031480001
ORTHOMCL285(35 genes,8 taxa):Vitis viniferaGSVIVT01033667001
ORTHOMCL285(35 genes,8 taxa):Oryza sativaOs03t0682100-00
ORTHOMCL285(35 genes,8 taxa):Oryza sativaOs03t0800000-01
ORTHOMCL285(35 genes,8 taxa):Oryza sativaOs03t0800000-02
ORTHOMCL285(35 genes,8 taxa):Oryza sativaOs10t0169900-00
ORTHOMCL285(35 genes,8 taxa):Oryza sativaOs12t0484600-02
ORTHOMCL285(35 genes,8 taxa):Populus trichocarpaPOPTR_0002s13500.1
ORTHOMCL285(35 genes,8 taxa):Populus trichocarpaPOPTR_0004s22540.1
ORTHOMCL285(35 genes,8 taxa):Populus trichocarpaPOPTR_0006s12430.1
ORTHOMCL285(35 genes,8 taxa):Populus trichocarpaPOPTR_0008s03280.1
ORTHOMCL285(35 genes,8 taxa):Populus trichocarpaPOPTR_0009s01190.1
ORTHOMCL285(35 genes,8 taxa):Sorghum bicolorSb01g004940.1
ORTHOMCL285(35 genes,8 taxa):Sorghum bicolorSb01g011890.1
ORTHOMCL285(35 genes,8 taxa):Sorghum bicolorSb02g005120.1
ORTHOMCL285(35 genes,8 taxa):Sorghum bicolorSb05g026300.1
ORTHOMCL285(35 genes,8 taxa):Sorghum bicolorSb08g014860.1
ORTHOMCL285(35 genes,8 taxa):Carica papayaevm.TU.supercontig_1.12
ORTHOMCL285(35 genes,8 taxa):Carica papayaevm.TU.supercontig_53.147
ORTHOMCL285(35 genes,8 taxa):Carica papayaevm.TU.supercontig_92.102
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:30013331..32585741 (+)A.thalianaChr2:11329870..12685087 (+)118
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:30146190..32100648 (+)B.rapaA07:1081313..2011461 (-)54
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
IAT2G281201198568711987738Chr2Subgenome_I129
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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