Basic Information
Gene Model:Bol026384
Gene Family:Antiporter Super Family
Chromosome:C04
Scaffold:Scaffold000083
Sequence:
 | 
Gene Structure
Nucleotide Length:2820 bp
Transcript Length:2532 bp
Protein Length:843 aa
Strand:-
Location:C04: 31013660 : 31016479
Gene CDSs(4): 1-387 | 485-1486 | 1588-2253 | 2344-2820 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00999Na_H_Exchanger 98 489 2.8e-17IPR006153Cation/H+ exchanger
Segsegseg 471 484 NANot foundNot found
Segsegseg 348 357 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0006812 Biological Process cation transport
GO:0015299 Molecular Function solute:hydrogen antiporter activity
GO:0016021 Cellular Component integral to membrane
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
O229202e-75CHX13_ARATH K(+)/H(+) antiporter 13 OS=Arabidopsis thaliana GN=CHX13 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q58P710.0Q58P71_ARATH Cation/H+ exchanger (Fragment) OS=Arabidopsis thaliana GN=CHX08 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1083(19 genes,3 taxa):Arabidopsis thalianaAT1G08135.1
ORTHOMCL1083(19 genes,3 taxa):Arabidopsis thalianaAT1G08140.1
ORTHOMCL1083(19 genes,3 taxa):Arabidopsis thalianaAT1G08150.1
ORTHOMCL1083(19 genes,3 taxa):Arabidopsis thalianaAT2G28170.1
ORTHOMCL1083(19 genes,3 taxa):Arabidopsis thalianaAT2G28180.1
ORTHOMCL1083(19 genes,3 taxa):Brassica oleraceaBol006534
ORTHOMCL1083(19 genes,3 taxa):Brassica oleraceaBol006535
ORTHOMCL1083(19 genes,3 taxa):Brassica oleraceaBol006536
ORTHOMCL1083(19 genes,3 taxa):Brassica oleraceaBol026382
ORTHOMCL1083(19 genes,3 taxa):Brassica oleraceaBol026384
ORTHOMCL1083(19 genes,3 taxa):Brassica oleraceaBol033246
ORTHOMCL1083(19 genes,3 taxa):Brassica oleraceaBol041186
ORTHOMCL1083(19 genes,3 taxa):Brassica oleraceaBol041187
ORTHOMCL1083(19 genes,3 taxa):Brassica rapaBra018650
ORTHOMCL1083(19 genes,3 taxa):Brassica rapaBra018651
ORTHOMCL1083(19 genes,3 taxa):Brassica rapaBra031613
ORTHOMCL1083(19 genes,3 taxa):Brassica rapaBra031614
ORTHOMCL1083(19 genes,3 taxa):Brassica rapaBra034393
ORTHOMCL1083(19 genes,3 taxa):Brassica rapaBra035668
Tandem Duplication
ClusterGene Num.Gene List
Cluster_10202Bol026382 Bol026384 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:30013331..32585741 (+)A.thalianaChr2:11329870..12685087 (+)118
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:30146190..32100648 (+)B.rapaA07:1081313..2011461 (-)54
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo