Basic Information
Gene Model:Bol026354
Gene Family:Protein Kinase Gene Families
Chromosome:C06
Scaffold:Scaffold000084
Sequence:
 | 
Gene Structure
Nucleotide Length:3264 bp
Transcript Length:3264 bp
Protein Length:1087 aa
Strand:+
Location:C06: 4223272 : 4226535
Gene CDSs(1): 1-3264 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50011PROTEIN_KINASE_DOM 794 1065 35.990IPR000719Protein kinase, catalytic domain
HMMPantherPTHR23258SERINE-THREONINE PRO 119 973 2.4e-238Not foundNot found
HMMPantherPTHR23258:SF473LEUCINE-RICH REPEAT 119 973 2.4e-238Not foundNot found
HMMSmartSM00219no description 794 1065 2.1e-23IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 794 1065 1.2e-36IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00369no description 622 645 23IPR003591Leucine-rich repeat, typical subtype
HMMSmartSM00369no description 512 536 4.6IPR003591Leucine-rich repeat, typical subtype
HMMSmartSM00369no description 361 385 3.8e+02IPR003591Leucine-rich repeat, typical subtype
HMMSmartSM00369no description 289 313 33IPR003591Leucine-rich repeat, typical subtype
HMMSmartSM00369no description 138 162 1.8e+02IPR003591Leucine-rich repeat, typical subtype
HMMSmartSM00369no description 113 137 8.7IPR003591Leucine-rich repeat, typical subtype
Segsegseg 1079 1085 NANot foundNot found
Segsegseg 106 122 NANot foundNot found
PatternScanPS00108PROTEIN_KINASE_ST 916 928 NAIPR008271Serine/threonine-protein kinase, active site
PatternScanPS00107PROTEIN_KINASE_ATP 800 823 NAIPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.10no description 872 1076 1.1e-49Not foundNot found
Gene3DG3DSA:3.30.200.20no description 775 869 3.6e-19Not foundNot found
Gene3DG3DSA:3.80.10.10no description 457 692 5.5e-44Not foundNot found
Gene3DG3DSA:3.80.10.10no description 282 454 5.6e-31Not foundNot found
Gene3DG3DSA:3.80.10.10no description 43 280 8.4e-41Not foundNot found
superfamilySSF52058L domain-like 67 446 1.1e-60Not foundNot found
superfamilySSF52047RNI-like 330 681 1.3e-51Not foundNot found
superfamilySSF56112Protein kinase-like 764 1065 3.8e-79IPR011009Protein kinase-like domain
HMMPfamPF00560LRR_1 624 646 0.00018IPR001611Leucine-rich repeat
HMMPfamPF00069Pkinase 794 993 2.6e-36IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF00560LRR_1 363 385 1.2IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 514 536 0.0036IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 315 337 0.031IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 243 265 1.6IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 291 313 0.008IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 219 241 0.036IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 194 215 1.2IPR001611Leucine-rich repeat
HMMPfamPF08263LRRNT_2 46 84 1.1e-11IPR013210Leucine-rich repeat, N-terminal
HMMPfamPF00560LRR_1 115 138 0.00079IPR001611Leucine-rich repeat
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005515 Molecular Function protein binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q9C7S50.0PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1
TrEMBL
Best HitE_value Description
C0LGI80.0C0LGI8_ARATH Leucine-rich repeat receptor-like protein kinase (Fragment) OS=Arabidopsis thaliana GN=LRR-RLK PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL68(81 genes,8 taxa):Arabidopsis thalianaAT1G17240.1
ORTHOMCL68(81 genes,8 taxa):Arabidopsis thalianaAT1G17250.1
ORTHOMCL68(81 genes,8 taxa):Arabidopsis thalianaAT1G72300.1
ORTHOMCL68(81 genes,8 taxa):Arabidopsis thalianaAT2G02220.1
ORTHOMCL68(81 genes,8 taxa):Arabidopsis thalianaAT5G53890.1
ORTHOMCL68(81 genes,8 taxa):Brassica oleraceaBol007175
ORTHOMCL68(81 genes,8 taxa):Brassica oleraceaBol015128
ORTHOMCL68(81 genes,8 taxa):Brassica oleraceaBol026354
ORTHOMCL68(81 genes,8 taxa):Brassica oleraceaBol029306
ORTHOMCL68(81 genes,8 taxa):Brassica oleraceaBol031504
ORTHOMCL68(81 genes,8 taxa):Brassica oleraceaBol034886
ORTHOMCL68(81 genes,8 taxa):Brassica oleraceaBol038299
ORTHOMCL68(81 genes,8 taxa):Brassica oleraceaBol038795
ORTHOMCL68(81 genes,8 taxa):Brassica rapaBra003026
ORTHOMCL68(81 genes,8 taxa):Brassica rapaBra008027
ORTHOMCL68(81 genes,8 taxa):Brassica rapaBra016068
ORTHOMCL68(81 genes,8 taxa):Brassica rapaBra016611
ORTHOMCL68(81 genes,8 taxa):Brassica rapaBra022679
ORTHOMCL68(81 genes,8 taxa):Brassica rapaBra026610
ORTHOMCL68(81 genes,8 taxa):Brassica rapaBra026823
ORTHOMCL68(81 genes,8 taxa):Vitis viniferaGSVIVT01014303001
ORTHOMCL68(81 genes,8 taxa):Vitis viniferaGSVIVT01016648001
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs02t0116700-01
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs02t0153100-00
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs02t0153200-01
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs02t0153400-00
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs02t0153500-00
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs02t0153700-01
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs02t0153900-01
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs02t0154000-00
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs02t0154200-01
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs02t0155400-01
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs02t0155600-00
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs02t0156400-01
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs02t0156600-00
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs02t0156633-00
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs02t0156800-01
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs02t0157200-00
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs02t0157400-01
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs02t0629400-01
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs04t0672100-01
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs04t0672600-01
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs06t0691800-01
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs06t0692100-01
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs06t0692300-00
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs06t0692500-00
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs06t0692600-01
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs06t0692700-01
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs07t0107800-01
ORTHOMCL68(81 genes,8 taxa):Oryza sativaOs07t0107800-02
ORTHOMCL68(81 genes,8 taxa):Populus trichocarpaPOPTR_0001s16110.1
ORTHOMCL68(81 genes,8 taxa):Populus trichocarpaPOPTR_0001s16110.2
ORTHOMCL68(81 genes,8 taxa):Populus trichocarpaPOPTR_0001s40900.1
ORTHOMCL68(81 genes,8 taxa):Populus trichocarpaPOPTR_0003s07160.1
ORTHOMCL68(81 genes,8 taxa):Populus trichocarpaPOPTR_0008s14390.1
ORTHOMCL68(81 genes,8 taxa):Populus trichocarpaPOPTR_0010s10790.1
ORTHOMCL68(81 genes,8 taxa):Populus trichocarpaPOPTR_0011s11780.1
ORTHOMCL68(81 genes,8 taxa):Sorghum bicolorSb0019s003400.1
ORTHOMCL68(81 genes,8 taxa):Sorghum bicolorSb02g000750.1
ORTHOMCL68(81 genes,8 taxa):Sorghum bicolorSb04g001210.1
ORTHOMCL68(81 genes,8 taxa):Sorghum bicolorSb04g003800.1
ORTHOMCL68(81 genes,8 taxa):Sorghum bicolorSb04g003810.1
ORTHOMCL68(81 genes,8 taxa):Sorghum bicolorSb04g003820.1
ORTHOMCL68(81 genes,8 taxa):Sorghum bicolorSb04g003830.1
ORTHOMCL68(81 genes,8 taxa):Sorghum bicolorSb04g003840.1
ORTHOMCL68(81 genes,8 taxa):Sorghum bicolorSb04g003860.1
ORTHOMCL68(81 genes,8 taxa):Sorghum bicolorSb04g003870.1
ORTHOMCL68(81 genes,8 taxa):Sorghum bicolorSb04g003910.1
ORTHOMCL68(81 genes,8 taxa):Sorghum bicolorSb04g003920.1
ORTHOMCL68(81 genes,8 taxa):Sorghum bicolorSb04g003930.1
ORTHOMCL68(81 genes,8 taxa):Sorghum bicolorSb04g003940.1
ORTHOMCL68(81 genes,8 taxa):Sorghum bicolorSb04g026660.1
ORTHOMCL68(81 genes,8 taxa):Sorghum bicolorSb05g021860.1
ORTHOMCL68(81 genes,8 taxa):Sorghum bicolorSb06g032520.1
ORTHOMCL68(81 genes,8 taxa):Sorghum bicolorSb06g032550.1
ORTHOMCL68(81 genes,8 taxa):Sorghum bicolorSb08g016220.1
ORTHOMCL68(81 genes,8 taxa):Sorghum bicolorSb10g028170.1
ORTHOMCL68(81 genes,8 taxa):Sorghum bicolorSb10g028200.1
ORTHOMCL68(81 genes,8 taxa):Sorghum bicolorSb10g028210.1
ORTHOMCL68(81 genes,8 taxa):Carica papayaevm.TU.supercontig_2.58
ORTHOMCL68(81 genes,8 taxa):Carica papayaevm.TU.supercontig_229.13
Tandem Duplication
ClusterGene Num.Gene List
Cluster_17702Bol026354 Bol026355 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:4201241..5347428 (-)A.thalianaChr1:26266609..26939106 (+)87
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:4201241..5223016 (+)B.rapaA09:19597984..20394745 (+)33
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G723002721747727221123Chr1Subgenome_III(LF)587
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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