Basic Information
Gene Model:Bol026348
Gene Family:Transcription Factor Families
Chromosome:C06
Scaffold:Scaffold000084
Sequence:
 | 
Gene Structure
Nucleotide Length:765 bp
Transcript Length:765 bp
Protein Length:254 aa
Strand:-
Location:C06: 4201241 : 4202005
Gene CDSs(1): 1-765 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 122 137 NANot foundNot found
Segsegseg 153 164 NANot foundNot found
Segsegseg 54 61 NANot foundNot found
HMMPfamPF00847AP2 61 112 3.7e-18IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 62 125 1.8e-35IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS51032AP2_ERF 62 119 23.446IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 61 122 2e-22IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 61 122 3.5e-23IPR016177DNA-binding, integrase-type
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q8H0T55e-58ERF73_ARATH Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1
TrEMBL
Best HitE_value Description
B3H5K83e-65B3H5K8_ARATH Uncharacterized protein At1g72360.3 OS=Arabidopsis thaliana GN=At1g72360 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL17792(3 genes,3 taxa):Arabidopsis thalianaAT1G72360.2
ORTHOMCL17792(3 genes,3 taxa):Brassica oleraceaBol026348
ORTHOMCL17792(3 genes,3 taxa):Brassica rapaBra016063
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:3518457..4226535 (-)A.thalianaChr1:5891324..6224151 (+)29
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:2944597..4226535 (+)B.rapaA08:2515576..2988508 (+)34
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G723602724181227242827Chr1Subgenome_III(LF)587
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo