Basic Information
Gene Model:Bol026318
Gene Family:Not classificated
Chromosome:C06
Scaffold:Scaffold000084
Sequence:
 | 
Gene Structure
Nucleotide Length:1733 bp
Transcript Length:1455 bp
Protein Length:484 aa
Strand:-
Location:C06: 4029223 : 4030955
Gene CDSs(4): 1-335 | 466-571 | 648-1001 | 1074-1733 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS01032PP2C 209 217 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
Segsegseg 58 66 NANot foundNot found
HMMSmartSM00332no description 150 472 1.2e-101IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 159 467 2.6e-67IPR014045Protein phosphatase 2C, N-terminal
superfamilySSF81606Protein serine/threo 139 479 2.6e-75IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 138 478 2.3e-73IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832PROTEIN PHOSPHATASE 138 483 2.2e-142IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF87PROTEIN PHOSPHATASE 138 483 2.2e-142Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q9CAJ00.0P2C16_ARATH Protein phosphatase 2C 16 OS=Arabidopsis thaliana GN=HAB1 PE=1 SV=1
TrEMBL
Best HitE_value Description
C0Z2511e-170C0Z251_ARATH AT1G72770 protein OS=Arabidopsis thaliana GN=AT1G72770 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2813(13 genes,8 taxa):Arabidopsis thalianaAT1G17550.1
ORTHOMCL2813(13 genes,8 taxa):Arabidopsis thalianaAT1G72770.1
ORTHOMCL2813(13 genes,8 taxa):Brassica oleraceaBol013257
ORTHOMCL2813(13 genes,8 taxa):Brassica oleraceaBol022553
ORTHOMCL2813(13 genes,8 taxa):Brassica oleraceaBol026318
ORTHOMCL2813(13 genes,8 taxa):Brassica rapaBra016034
ORTHOMCL2813(13 genes,8 taxa):Brassica rapaBra016595
ORTHOMCL2813(13 genes,8 taxa):Brassica rapaBra025964
ORTHOMCL2813(13 genes,8 taxa):Vitis viniferaGSVIVT01016816001
ORTHOMCL2813(13 genes,8 taxa):Oryza sativaOs01t0583100-01
ORTHOMCL2813(13 genes,8 taxa):Populus trichocarpaPOPTR_0003s04120.1
ORTHOMCL2813(13 genes,8 taxa):Sorghum bicolorSb03g026070.1
ORTHOMCL2813(13 genes,8 taxa):Carica papayaevm.TU.supercontig_25.87
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:3518457..4226535 (-)A.thalianaChr1:5891324..6224151 (+)29
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:2944597..4226535 (+)B.rapaA08:2515576..2988508 (+)34
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G727702739005827393252Chr1Subgenome_III(LF)587
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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