Basic Information
Gene Model:Bol026164
Gene Family:Transcription Factor Families
Chromosome:C06
Scaffold:Scaffold000084
Sequence:
 | 
Gene Structure
Nucleotide Length:1083 bp
Transcript Length:825 bp
Protein Length:274 aa
Strand:+
Location:C06: 3135253 : 3136335
Gene CDSs(4): 1-74 | 180-313 | 392-708 | 784-1083 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02042RWP-RK 116 167 3.3e-16IPR003035Plant regulator RWP-RK
Segsegseg 237 259 NANot foundNot found
Segsegseg 194 205 NANot foundNot found
Segsegseg 54 68 NANot foundNot found
Coilcoilcoiled-coil 186 207 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
Q9CA661e-86Q9CA66_ARATH Putative uncharacterized protein F1M20.16 OS=Arabidopsis thaliana GN=At1g74480 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL12677(6 genes,5 taxa):Arabidopsis thalianaAT1G74480.1
ORTHOMCL12677(6 genes,5 taxa):Brassica oleraceaBol019242
ORTHOMCL12677(6 genes,5 taxa):Brassica oleraceaBol026164
ORTHOMCL12677(6 genes,5 taxa):Brassica rapaBra015907
ORTHOMCL12677(6 genes,5 taxa):Vitis viniferaGSVIVT01007998001
ORTHOMCL12677(6 genes,5 taxa):Carica papayaevm.TU.supercontig_423.7
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:2767960..3653221 (-)A.thalianaChr1:6244384..6703368 (+)32
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:2767960..3191217 (+)B.rapaA09:4332997..4541012 (-)11
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G744802799303227994178Chr1Subgenome_III(LF)587
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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