Basic Information
Gene Model:Bol026163
Gene Family:Transcription Factor Families
Chromosome:C06
Scaffold:Scaffold000084
Sequence:
 | 
Gene Structure
Nucleotide Length:385 bp
Transcript Length:273 bp
Protein Length:90 aa
Strand:+
Location:C06: 3129768 : 3130152
Gene CDSs(2): 1-123 | 236-385 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF47459HLH, helix-loop-heli 3 83 2.9e-07IPR011598Helix-loop-helix DNA-binding
ProfileScanPS50888HLH 4 59 9.200IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMPfamPF00010HLH 8 59 0.0028IPR001092Basic helix-loop-helix dimerisation region bHLH
Segsegseg 2 15 NANot foundNot found
HMMPantherPTHR12565:SF8UPSTREAM TRANSCRIPTI 17 71 4.9e-06Not foundNot found
HMMPantherPTHR12565STEROL REGULATORY EL 17 71 4.9e-06Not foundNot found
Coilcoilcoiled-coil 55 83 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9CA645e-34BH135_ARATH Transcription factor bHLH135 OS=Arabidopsis thaliana GN=BHLH135 PE=4 SV=1
TrEMBL
Best HitE_value Description
C6T4Y32e-27C6T4Y3_SOYBN Putative uncharacterized protein OS=Glycine max PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4580(11 genes,6 taxa):Arabidopsis thalianaAT1G74500.1
ORTHOMCL4580(11 genes,6 taxa):Arabidopsis thalianaAT3G47710.1
ORTHOMCL4580(11 genes,6 taxa):Brassica oleraceaBol026163
ORTHOMCL4580(11 genes,6 taxa):Brassica rapaBra003797
ORTHOMCL4580(11 genes,6 taxa):Brassica rapaBra008154
ORTHOMCL4580(11 genes,6 taxa):Brassica rapaBra015906
ORTHOMCL4580(11 genes,6 taxa):Brassica rapaBra018117
ORTHOMCL4580(11 genes,6 taxa):Vitis viniferaGSVIVT01008034001
ORTHOMCL4580(11 genes,6 taxa):Populus trichocarpaPOPTR_0012s07130.1
ORTHOMCL4580(11 genes,6 taxa):Populus trichocarpaPOPTR_0015s07460.1
ORTHOMCL4580(11 genes,6 taxa):Carica papayaevm.TU.supercontig_388.7
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:2767960..3653221 (-)A.thalianaChr1:6244384..6703368 (+)32
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:2767960..3191217 (+)B.rapaA09:4332997..4541012 (-)11
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G745002799817527998821Chr1Subgenome_III(LF)587
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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