Basic Information
Gene Model:Bol026142
Gene Family:Not classificated
Chromosome:C06
Scaffold:Scaffold000084
Sequence:
 | 
Gene Structure
Nucleotide Length:1095 bp
Transcript Length:558 bp
Protein Length:185 aa
Strand:+
Location:C06: 3000496 : 3001590
Gene CDSs(5): 1-118 | 204-280 | 539-616 | 720-790 | 882-1095 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00072Response_reg 16 138 3.4e-23IPR001789Signal transduction response regulator, receiver region
ProfileScanPS50110RESPONSE_REGULATORY 15 142 26.591IPR001789Signal transduction response regulator, receiver region
HMMPantherPTHR23283:SF49TWO-COMPONENT SENSOR 7 147 3.4e-16Not foundNot found
HMMPantherPTHR23283SENSOR HISTIDINE KIN 7 147 3.4e-16Not foundNot found
Segsegseg 53 68 NANot foundNot found
Segsegseg 167 185 NANot foundNot found
HMMSmartSM00448no description 14 141 5.5e-21IPR001789Signal transduction response regulator, receiver region
superfamilySSF52172CheY-like 11 150 5.5e-27IPR011006CheY-like
Gene3DG3DSA:3.40.50.2300no description 8 142 1.2e-22Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q7G8V26e-75ARR15_ARATH Two-component response regulator ARR15 OS=Arabidopsis thaliana GN=ARR15 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q2HIJ62e-64Q2HIJ6_ARATH At1g19050 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL17818(3 genes,3 taxa):Arabidopsis thalianaAT1G74890.1
ORTHOMCL17818(3 genes,3 taxa):Brassica oleraceaBol026142
ORTHOMCL17818(3 genes,3 taxa):Brassica rapaBra015885
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:2767960..3653221 (-)A.thalianaChr1:6244384..6703368 (+)32
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:2767960..3191217 (+)B.rapaA09:4332997..4541012 (-)11
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G748902813159028132710Chr1Subgenome_III(LF)587
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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