Basic Information
Gene Model:Bol026132
Gene Family:Not classificated
Chromosome:C06
Scaffold:Scaffold000084
Sequence:
 | 
Gene Structure
Nucleotide Length:4001 bp
Transcript Length:2214 bp
Protein Length:737 aa
Strand:+
Location:C06: 2953432 : 2957432
Gene CDSs(15): 1-305 | 404-462 | 754-818 | 1103-1237 | 1347-1395 | 1490-1602 | 1678-1749 | 1863-1973 | 2083-2261 | 2341-2654 | 2737-3074 | 3178-3282 | 3370-3507 | 3686-3852 | 3938-4001 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR23084PHOSPHATIDYLINOSITOL 575 733 2.1e-20Not foundNot found
HMMSmartSM00698no description 647 668 1.3IPR003409MORN motif
HMMSmartSM00698no description 624 645 1.9e-06IPR003409MORN motif
superfamilySSF52490Tubulin nucleotide-b 70 241 1.9e-18IPR019746Tubulin/FtsZ, N-terminal
superfamilySSF82185Histone H3 K4-specif 599 731 1e-27Not foundNot found
Segsegseg 14 30 NANot foundNot found
Gene3DG3DSA:2.20.110.10no description 602 673 1.1e-08Not foundNot found
HMMPfamPF02493MORN 695 717 0.26IPR003409MORN motif
HMMPfamPF02493MORN 649 671 3.2e-05IPR003409MORN motif
HMMPfamPF02493MORN 672 694 1.9IPR003409MORN motif
HMMPfamPF02493MORN 626 648 8.6e-08IPR003409MORN motif
HMMPfamPF02493MORN 603 625 0.4IPR003409MORN motif
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q8RY892e-15PI5K8_ARATH Phosphatidylinositol-4-phosphate 5-kinase 8 OS=Arabidopsis thaliana GN=PIP5K8 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q6F6B50.0Q6F6B5_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9336(8 genes,8 taxa):Arabidopsis thalianaAT1G75010.1
ORTHOMCL9336(8 genes,8 taxa):Brassica oleraceaBol026132
ORTHOMCL9336(8 genes,8 taxa):Brassica rapaBra015875
ORTHOMCL9336(8 genes,8 taxa):Vitis viniferaGSVIVT01010290001
ORTHOMCL9336(8 genes,8 taxa):Oryza sativaOs09t0555600-01
ORTHOMCL9336(8 genes,8 taxa):Populus trichocarpaPOPTR_0010s10960.1
ORTHOMCL9336(8 genes,8 taxa):Sorghum bicolorSb02g032380.1
ORTHOMCL9336(8 genes,8 taxa):Carica papayaevm.TU.supercontig_2.79
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:2767960..3653221 (-)A.thalianaChr1:6244384..6703368 (+)32
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:2767960..3191217 (+)B.rapaA09:4332997..4541012 (-)11
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G750102816484028170054Chr1Subgenome_III(LF)587
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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