Basic Information
Gene Model:Bol026052
Gene Family:Protein Kinase Gene Families
Chromosome:C03
Scaffold:Scaffold000085
Sequence:
 | 
Gene Structure
Nucleotide Length:3404 bp
Transcript Length:2367 bp
Protein Length:788 aa
Strand:-
Location:C03: 5985275 : 5988678
Gene CDSs(9): 1-216 | 295-1044 | 1118-1546 | 1612-1713 | 1795-2096 | 2184-2299 | 2799-2914 | 2994-3115 | 3191-3404 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 21 37 NANot foundNot found
Segsegseg 219 233 NANot foundNot found
Segsegseg 342 366 NANot foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 350 773 4.1e-202Not foundNot found
HMMPantherPTHR23258:SF447RECEPTOR-LIKE PROTEI 350 773 4.1e-202Not foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 424 687 34.633IPR000719Protein kinase, catalytic domain
PatternScanPS00108PROTEIN_KINASE_ST 542 554 NAIPR008271Serine/threonine-protein kinase, active site
PatternScanPS00107PROTEIN_KINASE_ATP 430 451 NAIPR017441Protein kinase, ATP binding site
HMMSmartSM00504no description 710 773 5.5e-23IPR003613U box domain
HMMSmartSM00219no description 424 687 3.9e-15IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 424 687 2.8e-34IPR002290Serine/threonine-protein kinase domain
Gene3DG3DSA:1.10.510.10no description 496 715 1.6e-40Not foundNot found
Gene3DG3DSA:3.30.200.20no description 405 496 8.8e-22Not foundNot found
superfamilySSF52402Adenine nucleotide a 18 172 5e-07Not foundNot found
superfamilySSF57850RING/U-box 703 780 1.2e-14Not foundNot found
superfamilySSF56112Protein kinase-like 409 707 8.3e-70IPR011009Protein kinase-like domain
Coilcoilcoiled-coil 684 705 NANot foundNot found
Coilcoilcoiled-coil 376 397 NANot foundNot found
Coilcoilcoiled-coil 350 371 NANot foundNot found
HMMPfamPF04564U-box 708 780 3.1e-18IPR003613U box domain
HMMPfamPF00069Pkinase 424 626 8e-49IPR017442Serine/threonine-protein kinase-like domain
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q8S8S70.0PUB34_ARATH U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q3E8A30.0Q3E8A3_ARATH Putative uncharacterized protein At5g57035.1 OS=Arabidopsis thaliana GN=At5g57035 PE=4 SV=2
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G389902e-44K04733IRAK4interleukin-1 receptor-associated kinase 4
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1505(17 genes,8 taxa):Arabidopsis thalianaAT2G19410.1
ORTHOMCL1505(17 genes,8 taxa):Arabidopsis thalianaAT5G57035.1
ORTHOMCL1505(17 genes,8 taxa):Brassica oleraceaBol003293
ORTHOMCL1505(17 genes,8 taxa):Brassica oleraceaBol022718
ORTHOMCL1505(17 genes,8 taxa):Brassica oleraceaBol026052
ORTHOMCL1505(17 genes,8 taxa):Brassica oleraceaBol037990
ORTHOMCL1505(17 genes,8 taxa):Brassica rapaBra002768
ORTHOMCL1505(17 genes,8 taxa):Brassica rapaBra006836
ORTHOMCL1505(17 genes,8 taxa):Brassica rapaBra012181
ORTHOMCL1505(17 genes,8 taxa):Brassica rapaBra038999
ORTHOMCL1505(17 genes,8 taxa):Vitis viniferaGSVIVT01015162001
ORTHOMCL1505(17 genes,8 taxa):Oryza sativaOs02t0218600-00
ORTHOMCL1505(17 genes,8 taxa):Oryza sativaOs06t0574200-01
ORTHOMCL1505(17 genes,8 taxa):Populus trichocarpaPOPTR_0006s14900.1
ORTHOMCL1505(17 genes,8 taxa):Sorghum bicolorSb04g007630.1
ORTHOMCL1505(17 genes,8 taxa):Sorghum bicolorSb10g022690.1
ORTHOMCL1505(17 genes,8 taxa):Carica papayaevm.TU.supercontig_28.112
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:5477141..6174899 (-)A.thalianaChr5:22885192..23820237 (+)110
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:3384356..7484156 (+)B.rapaA10:5981599..12607476 (+)333
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
WAT5G570352308066123083988Chr5Subgenome_II324
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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