Basic Information
Gene Model:Bol026036
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000085
Sequence:
 | 
Gene Structure
Nucleotide Length:2104 bp
Transcript Length:1665 bp
Protein Length:554 aa
Strand:+
Location:C03: 5905860 : 5907963
Gene CDSs(4): 1-70 | 376-919 | 987-1294 | 1362-2104 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR21736:SF13VERNALIZATION-INSENS 36 341 8.6e-137Not foundNot found
HMMPantherPTHR21736VERNALIZATION-INSENS 36 341 8.6e-137Not foundNot found
Segsegseg 441 451 NANot foundNot found
Segsegseg 503 515 NANot foundNot found
Segsegseg 399 407 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9FIE30.0VIN3_ARATH Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana GN=VIN3 PE=2 SV=2
TrEMBL
Best HitE_value Description
A7Q6D81e-112A7Q6D8_VITVI Chromosome chr11 scaffold_56, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00031355001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL14438(5 genes,3 taxa):Arabidopsis thalianaAT5G57380.1
ORTHOMCL14438(5 genes,3 taxa):Brassica oleraceaBol014227
ORTHOMCL14438(5 genes,3 taxa):Brassica oleraceaBol026036
ORTHOMCL14438(5 genes,3 taxa):Brassica rapaBra006824
ORTHOMCL14438(5 genes,3 taxa):Brassica rapaBra020445
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:5477141..6174899 (-)A.thalianaChr5:22885192..23820237 (+)110
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:3384356..7484156 (+)B.rapaA10:5981599..12607476 (+)333
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
WAT5G573802324639523249504Chr5Subgenome_II324
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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