Basic Information
Gene Model:Bol025996
Gene Family:Protein Kinase Gene Families
Chromosome:C03
Scaffold:Scaffold000085
Sequence:
 | 
Gene Structure
Nucleotide Length:4661 bp
Transcript Length:2640 bp
Protein Length:879 aa
Strand:-
Location:C03: 5689748 : 5694408
Gene CDSs(21): 1-123 | 211-351 | 422-534 | 632-683 | 804-935 | 1026-1132 | 1260-1309 | 1442-1545 | 1627-1707 | 1787-1871 | 1958-2034 | 2280-2339 | 2419-2523 | 2607-2656 | 2747-2853 | 2930-3000 | 3094-3316 | 3443-3647 | 3733-3824 | 3916-4098 | 4183-4661 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00069Pkinase 538 828 7.4e-84IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF08447PAS_3 137 223 0.0011IPR013655PAS fold-3
HMMPfamPF00989PAS 394 483 1.4e-07IPR013767PAS fold
ProfileScanPS50113PAC 441 495 12.235IPR000700PAS-associated, C-terminal
ProfileScanPS50113PAC 184 238 11.385IPR000700PAS-associated, C-terminal
ProfileScanPS50112PAS 110 183 12.131IPR000014PAS
ProfileScanPS50112PAS 367 440 10.844IPR000014PAS
ProfileScanPS50011PROTEIN_KINASE_DOM 538 828 45.615IPR000719Protein kinase, catalytic domain
HMMSmartSM00219no description 538 828 3.7e-06IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 538 828 6.6e-89IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00091no description 369 438 1.3IPR000014PAS
HMMSmartSM00086no description 444 486 5.7e-08IPR001610PAC motif
HMMSmartSM00086no description 187 229 2.2e-05IPR001610PAC motif
HMMSmartSM00091no description 112 181 1.4IPR000014PAS
Segsegseg 702 712 NANot foundNot found
Segsegseg 321 331 NANot foundNot found
Segsegseg 29 36 NANot foundNot found
Segsegseg 87 104 NANot foundNot found
HMMPantherPTHR22985:SF88NONPHOTOTROPIC HYPOC 257 879 1.1e-175Not foundNot found
HMMPantherPTHR22985SERINE/THREONINE PRO 257 879 1.1e-175Not foundNot found
PatternScanPS00455AMP_BINDING 26 37 NAIPR020845AMP-binding, conserved site
PatternScanPS00107PROTEIN_KINASE_ATP 544 567 NAIPR017441Protein kinase, ATP binding site
PatternScanPS00108PROTEIN_KINASE_ST 659 671 NAIPR008271Serine/threonine-protein kinase, active site
HMMTigrTIGR00229sensory_box: PAS dom 372 493 1.2e-10IPR000014PAS
HMMTigrTIGR00229sensory_box: PAS dom 111 236 7.2e-08IPR000014PAS
Gene3DG3DSA:1.10.510.10no description 590 848 2.9e-60Not foundNot found
Gene3DG3DSA:3.30.450.20no description 122 229 2.2e-37Not foundNot found
Gene3DG3DSA:3.30.450.20no description 379 486 3.6e-36Not foundNot found
superfamilySSF55785PYP-like sensor doma 120 226 4.7e-26Not foundNot found
superfamilySSF55785PYP-like sensor doma 377 482 1.7e-25Not foundNot found
superfamilySSF56112Protein kinase-like 513 855 4.5e-83IPR011009Protein kinase-like domain
Gene Ontology
GO TermGO TypeDescription
GO:0000155 Molecular Function two-component sensor activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0004871 Molecular Function signal transducer activity
GO:0005524 Molecular Function ATP binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0006468 Biological Process protein phosphorylation
GO:0007165 Biological Process signal transduction
Swiss-Prot
Best HitE_value Description
P930250.0PHOT2_ARATH Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2 PE=1 SV=2
TrEMBL
Best HitE_value Description
A8MS490.0A8MS49_ARATH Uncharacterized protein At5g58140.3 OS=Arabidopsis thaliana GN=At5g58140 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL818(22 genes,8 taxa):Arabidopsis thalianaAT3G45780.1
ORTHOMCL818(22 genes,8 taxa):Arabidopsis thalianaAT5G58140.2
ORTHOMCL818(22 genes,8 taxa):Brassica oleraceaBol015559
ORTHOMCL818(22 genes,8 taxa):Brassica oleraceaBol016940
ORTHOMCL818(22 genes,8 taxa):Brassica oleraceaBol024106
ORTHOMCL818(22 genes,8 taxa):Brassica oleraceaBol025996
ORTHOMCL818(22 genes,8 taxa):Brassica rapaBra002669
ORTHOMCL818(22 genes,8 taxa):Brassica rapaBra006782
ORTHOMCL818(22 genes,8 taxa):Brassica rapaBra019474
ORTHOMCL818(22 genes,8 taxa):Brassica rapaBra020388
ORTHOMCL818(22 genes,8 taxa):Vitis viniferaGSVIVT01023842001
ORTHOMCL818(22 genes,8 taxa):Vitis viniferaGSVIVT01025082001
ORTHOMCL818(22 genes,8 taxa):Oryza sativaOs04t0304200-01
ORTHOMCL818(22 genes,8 taxa):Oryza sativaOs11t0102200-00
ORTHOMCL818(22 genes,8 taxa):Oryza sativaOs12t0101800-01
ORTHOMCL818(22 genes,8 taxa):Oryza sativaOs12t0101800-02
ORTHOMCL818(22 genes,8 taxa):Populus trichocarpaPOPTR_0001s35680.1
ORTHOMCL818(22 genes,8 taxa):Populus trichocarpaPOPTR_0004s21940.1
ORTHOMCL818(22 genes,8 taxa):Populus trichocarpaPOPTR_0009s17190.1
ORTHOMCL818(22 genes,8 taxa):Sorghum bicolorSb07g014860.1
ORTHOMCL818(22 genes,8 taxa):Sorghum bicolorSb08g000260.1
ORTHOMCL818(22 genes,8 taxa):Carica papayaevm.TU.supercontig_139.19
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:5477141..6174899 (-)A.thalianaChr5:22885192..23820237 (+)110
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:3384356..7484156 (+)B.rapaA10:5981599..12607476 (+)333
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
WAT5G581402352448723529400Chr5Subgenome_II324
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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