Basic Information
Gene Model:Bol025918
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000085
Sequence:
 | 
Gene Structure
Nucleotide Length:2135 bp
Transcript Length:1038 bp
Protein Length:345 aa
Strand:+
Location:C03: 5188685 : 5190819
Gene CDSs(11): 1-108 | 195-308 | 394-486 | 561-626 | 714-812 | 909-988 | 1076-1188 | 1356-1444 | 1679-1765 | 1835-1903 | 2016-2135 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103481Multidrug resistance 213 325 6.9e-05Not foundNot found
Segsegseg 66 80 NANot foundNot found
Segsegseg 316 341 NANot foundNot found
HMMPantherPTHR10778UDP-GALACTOSE TRANSP 44 341 1.4e-244Not foundNot found
HMMPantherPTHR10778:SF11UDP-GALACTOSE TRANSP 44 341 1.4e-244Not foundNot found
HMMPfamPF08449UAA 18 324 6.6e-126IPR013657UAA transporter
Gene Ontology
GO TermGO TypeDescription
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q55DM52e-70S35B2_DICDI Adenosine 3'-phospho 5'-phosphosulfate transporter 1 OS=Dictyostelium discoideum GN=slc35b2 PE=3 SV=1
TrEMBL
Best HitE_value Description
Q6NMB60.0Q6NMB6_ARATH At5g59740 OS=Arabidopsis thaliana GN=At5g59740 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL10794(8 genes,7 taxa):Arabidopsis thalianaAT5G59740.1
ORTHOMCL10794(8 genes,7 taxa):Brassica oleraceaBol017277
ORTHOMCL10794(8 genes,7 taxa):Brassica oleraceaBol025918
ORTHOMCL10794(8 genes,7 taxa):Brassica rapaBra002536
ORTHOMCL10794(8 genes,7 taxa):Vitis viniferaGSVIVT01025043001
ORTHOMCL10794(8 genes,7 taxa):Oryza sativaOs05t0115700-01
ORTHOMCL10794(8 genes,7 taxa):Populus trichocarpaPOPTR_0001s24150.1
ORTHOMCL10794(8 genes,7 taxa):Carica papayaevm.TU.supercontig_252.18
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:4908161..5453559 (-)A.thalianaChr5:23885855..24462536 (+)56
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:3384356..7484156 (+)B.rapaA10:5981599..12607476 (+)333
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
WAT5G597402407005124073055Chr5Subgenome_II324
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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