Basic Information
Gene Model:Bol025830
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000085
Sequence:
 | 
Gene Structure
Nucleotide Length:1127 bp
Transcript Length:666 bp
Protein Length:221 aa
Strand:-
Location:C03: 4704778 : 4705904
Gene CDSs(4): 1-91 | 336-499 | 622-812 | 908-1127 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR21136SNARE PROTEINS 7 220 5.7e-102Not foundNot found
HMMPantherPTHR21136:SF8VAMP-7 7 220 5.7e-102Not foundNot found
HMMPfamPF00957Synaptobrevin 124 212 3.2e-40IPR001388Synaptobrevin
superfamilySSF64356SNARE-like 2 120 3e-33IPR011012Longin-like
PatternScanPS00417SYNAPTOBREVIN 145 164 NAIPR001388Synaptobrevin
ProfileScanPS50892V_SNARE 127 187 17.952IPR001388Synaptobrevin
ProfileScanPS50859LONGIN 7 112 32.789IPR010908Longin
Gene3DG3DSA:1.20.5.110no description 112 191 1.5e-21Not foundNot found
Segsegseg 191 207 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0006810 Biological Process transport
GO:0016021 Cellular Component integral to membrane
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
Q9FMR51e-121VA714_ARATH Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1
TrEMBL
Best HitE_value Description
A1Z1S41e-120A1Z1S4_BRAJU Synaptobrevin-like protein OS=Brassica juncea PE=2 SV=2
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL25879(2 genes,2 taxa):Brassica oleraceaBol025830
ORTHOMCL25879(2 genes,2 taxa):Brassica rapaBra006623
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:1982512..4896037 (+)A.thalianaChr5:4002775..7686779 (+)386
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:3384356..7484156 (+)B.rapaA10:5981599..12607476 (+)333
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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